Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05363 ATGAATTCTCTCTCCCTCCATAACACTCTCCACTTCCACTTCCACCACACCTTCATCTCTTCCAAACCCACCCCTTTCTTCCTCAAAACAAAACCCCCAACCCATACACAATGCTGCATCAACAACAACAACACCATCATCGACATCGACATGGTAAAAACCAAACAAGGAACCTACGTCCCAAAACAGAACAAAGTCGTTGTCCTCTGGGACCTCGACAACAAACCCCCACGCGGCCCACCTTACGACGCCGCACTCTCTCTCAAAACCCTCGCCCAACGCTTCGGCGAACTCACCGACATCTCCGCCTACGCCAACCGCCACGCCTTCATCCACCTCCCTCAATGGGTCCTCAACCAACGCCGCGAACGCAAAAGCCTCGACATCCTCGAACGCAAGGGAATCGTCAACCCCTCCGAGCCCTACCTATGCTCCGTCTGCGGCCGGAAGTGCAAAACCAACGTTGATCTCAAGAAACACTTCAAGCAGCTTCACCAGCGAGAGCGGCAGAAGAAGCTGAACCGTTTGAAGTCGTTGAAGGGGAAGAAGAGACAGAAGTATAAGGAGCGGTTTGTTAGTGGGGACCAGAAGTATAATGATGCGGTTAGGGAGATTGTTACGCCGAGAGTTGGGTATGGTCTTGCGGCGGAGTTGCGGCGGGCGGGGGTTTTTGTGAAGACTGTGGAGGATAAGCCTCAGGCGGCTGATTGGGCTTTGAAGAAGCAGATGATGCATTCTATGAGTAGAGGGATTGATTGGTTGTTTTTGGTTTCGGATGATTCGGATTTTAGTGAGATGTTGAGGAAGGCTAGAGAGGCGAATTTAGGGACGGTTGTTGTTGGGGATGTTGATAGGGCTTTGGGGAGACATGCGGATTTGTGGGTTCCGTGGAATGCGGTTGAGAATGGGGAGGTTTTGGATATGGATTTGGTGGCAAAGAGTAGAGATAGGAGAAGAAGAACGAATACTACATCGACATCGACAGTGGATGATTTTGGTGATGTTTTGTTTTTTCAAGAGGACGAGGAAATGGAAATGGGAGAGGACTTTAGGTTGGAGTATAGCGAAGACGAGGATTCAGATGAATACACAAGTGATGAAGAAGATGATGATGGGTTTTATATTTATTGA 1131 0.4943 MNSLSLHNTLHFHFHHTFISSKPTPFFLKTKPPTHTQCCINNNNTIIDIDMVKTKQGTYVPKQNKVVVLWDLDNKPPRGPPYDAALSLKTLAQRFGELTDISAYANRHAFIHLPQWVLNQRRERKSLDILERKGIVNPSEPYLCSVCGRKCKTNVDLKKHFKQLHQRERQKKLNRLKSLKGKKRQKYKERFVSGDQKYNDAVREIVTPRVGYGLAAELRRAGVFVKTVEDKPQAADWALKKQMMHSMSRGIDWLFLVSDDSDFSEMLRKAREANLGTVVVGDVDRALGRHADLWVPWNAVENGEVLDMDLVAKSRDRRRRTNTTSTSTVDDFGDVLFFQEDEEMEMGEDFRLEYSEDEDSDEYTSDEEDDDGFYIY 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05363 376 Gene3D - 59 299 - -
Vivi4g05363 376 MobiDBLite consensus disorder prediction 348 376 - -
Vivi4g05363 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 170 IPR013087 -
Vivi4g05363 376 Coils Coil 162 182 - -
Vivi4g05363 376 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 31 358 - -
Vivi4g05363 376 CDD PIN_LabA-like 152 282 - -
Vivi4g05363 376 ProSitePatterns Zinc finger C2H2 type domain signature. 144 165 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05363 Vivi-Chr4 187119224 187120724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05363 7 373 C2H2 Transcription Factor Family AT5G52010 58.649 7.76e-156 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi4g05363 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05363 - - vvo:131596395 699.893