Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05336 ATGCAAGAATTTGGGGATAACACTAACTTCCTCAATACTGTGTCAACAGAAAAATCCATGGGGTGGGGTCACCTTGGAAGACACGGCTCAGATTCCGGCAACGACGCCGATGCAGGTCCGAGCACCAGCACGGCGGAGCAACACCGTTTTCCTTCGGCCGCGCAGCCGGAAATGATGAGAGCAGCTGAGAAAGACGATCAGTACGCCTCTTTCGTTTACGAAGCCTGCCGCGATGCCTTCCGCCACCTCTTCGGTACTAGAGTTGCGGTGGCTTATCAAAACGAGACGAAGCTTTTAGGGCAAATGCTTTACTATGTTCTCACAACAGGCTCAGGACAACAAACACTTGGAGAGGAATACTGTGACATCACTCAGGTTGCAGGACCTTATGGACTTCCCCCTACGCCTGCCAGGCGAGCTTTGTTTATTGTATACCAAACGGCGATTCCATACATTGCAGAACGTATTAGTTCTAGAATTGCTTCCCGAGGCATTATCCTATCTGATCACGAGTATGCTGAGGTTTTTGGTGAAAATGCACGTGGGAGTAGTAGTCATCGGGTTTCTTCGGGGAGTGAACTTGCTCCTTCGTCTGCCTCAGGGCAATCTACTTCAACTATGACGAGGTTGAAGGAGAAAGTCCGTGGATTTTGGTTGCATATGGTTCAGAGATGGCCTACGATGCTTCCTTTTGTTCGTGAGTTATTGCAGCTGGCTCTTCGTGCTAACCTCATGTTGTTTTACTTTGAAGGCCTCTATTATCATATATCCAAACGTGCTTCTGCAATTCGTTATGTGTTCATTGGAAAAGCATCAAATCAACGACCTAGATATCAAATACTGGGAGTATTTTTGCTGATTCAACTTTGTGTAATAGCTGCTGAAGCGCTTCGTCGAAGAAATTTTACATCAATTGCTGGTTCAGTTCATCAGGCATCCTTTGCAACCCAACATACATCAGCAGGACATGGTTTGCCTGTTCTAAACGAAGAAGGTAATTTGGCATCTACAGAAGCTGACGAAGGAAGTTGGGTATCGGGATCTTCATCTTCTGAGCATCATACAACCAGTGGTGTTAGCAAATGCACGCTTTGCCTGAGTAATCGTCAACACCCCACAGCTACTTCATGTGGCCATGTATTTTGCTGGAACTGTATAACAGAATGGTGCAATGAAAAGCCAGAGTGCCCTCTTTGCCGCACTCCTATAACACACTCAAGTCTAGTTTGTATTTATCATTCAGACTTCTAG 1251 0.462 MQEFGDNTNFLNTVSTEKSMGWGHLGRHGSDSGNDADAGPSTSTAEQHRFPSAAQPEMMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGPYGLPPTPARRALFIVYQTAIPYIAERISSRIASRGIILSDHEYAEVFGENARGSSSHRVSSGSELAPSSASGQSTSTMTRLKEKVRGFWLHMVQRWPTMLPFVRELLQLALRANLMLFYFEGLYYHISKRASAIRYVFIGKASNQRPRYQILGVFLLIQLCVIAAEALRRRNFTSIAGSVHQASFATQHTSAGHGLPVLNEEGNLASTEADEGSWVSGSSSSEHHTTSGVSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCIYHSDF 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05336 416 MobiDBLite consensus disorder prediction 35 50 - -
Vivi4g05336 416 SUPERFAMILY RING/U-box 361 405 - -
Vivi4g05336 416 ProSiteProfiles Zinc finger RING-type profile. 362 400 IPR001841 -
Vivi4g05336 416 CDD RING-HC_PEX10 360 411 - -
Vivi4g05336 416 Pfam Zinc finger, C3HC4 type (RING finger) 361 405 - -
Vivi4g05336 416 ProSitePatterns Zinc finger RING-type signature. 377 386 IPR017907 -
Vivi4g05336 416 MobiDBLite consensus disorder prediction 21 59 - -
Vivi4g05336 416 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 51 414 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Vivi4g05336 416 FunFam Peroxisome biogenesis factor 10 337 413 - -
Vivi4g05336 416 SMART ring_2 362 399 IPR001841 -
Vivi4g05336 416 MobiDBLite consensus disorder prediction 182 207 - -
Vivi4g05336 416 Pfam Pex2 / Pex12 amino terminal region 65 299 IPR006845 -
Vivi4g05336 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 335 413 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05336 Vivi-Chr4 186430796 186436955 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05336 356 412 C3H Transcription Factor Family AT4G28270 32.877 3.81e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05336 K13346 - gmx:100816042 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05336 4 186430796 186436955 Vivi4g05336 4 186430796 186436955 ECH