Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05327 ATGCCTAAAACCAAGAACAAGAGCAATGGACATAAAACCAAGTTCGGAGATGACAAGGATGGAAACACCTTGCCTTCAGGACCAGTGAAGCGGAAAAGGATGCGTCCTGCTAATCAGAAGAGAACAGCTGCATCTGAGATGTCTGCCTCAGCACAACTCGTGTTAGATGCAACAGGGAGCAGGTGCAACCGGAAAAACAGTCCTATTTGGTTTACTTTAGTTGCTTCAGAAGACCAGAATGGAGAAATTTCCTTGCCACAGATCTCTGCTTGCTATTTAAAAATAAAGAAGCATAGAGTGAAGATATCAATTAAGGCGCCTGCTATCAGCAACAAACTTGCTGATATCCCTCCTGATGATTACTCGTGGAGGAAGTACGGGCAGAAGCCGATCAAGGGCTCTCCTCACCTAAGGACTGAATCGGATTTGATCGAAGAGATTATCAAAACAGTTTTACTAAAATTGAGTCACAAGTATACAAATGAACTCTGA 492 0.4309 MPKTKNKSNGHKTKFGDDKDGNTLPSGPVKRKRMRPANQKRTAASEMSASAQLVLDATGSRCNRKNSPIWFTLVASEDQNGEISLPQISACYLKIKKHRVKISIKAPAISNKLADIPPDDYSWRKYGQKPIKGSPHLRTESDLIEEIIKTVLLKLSHKYTNEL 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05327 163 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 103 IPR044807 GO:0004842
Vivi4g05327 163 Pfam Plant zinc cluster domain 91 115 IPR018872 -
Vivi4g05327 163 Gene3D WRKY domain 96 159 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi4g05327 163 SMART WRKY_cls 117 159 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi4g05327 163 ProSiteProfiles WRKY domain profile. 112 139 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi4g05327 163 Pfam WRKY DNA -binding domain 119 138 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi4g05327 163 SUPERFAMILY WRKY DNA-binding domain 115 138 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi4g05327 163 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05327 Vivi-Chr4 186342751 186346433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05327 42 138 WRKY Transcription Factor Family AT2G30590 46.018 1.34e-21 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi4g05327 Plant_zn_clust 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05327 K16277 - vvo:131600545 331.257