Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05320 ATGGGTTACTATTATTATTATTCCTTATTGTGTGTTGTTTTGTTTTTATCCATTCAAATTTCTTTGGCTTCTTCAACTGAAGATCAAAAGAGAGATAAGATAACTGAGTTACCAGGGCAACCAAAGAACGTTGGATTTGATCAGTATTCAGGTTATATAACTGTGAATGAACCGAATGGAAGAGCACTGTTTTACTGGTTGACGGAAGCACCACTGAGTAGTGAACCCGATTCAAAGCCACTAGTTCTATGGCTTAGTAATGGTGCTGGTTGTTCTGCTATTTCTTATGGTGCTGCCGAAGAAATTGGCCCTTTTCATATTAAGCCTGATGGCAAAACACTTTACTCGAATCCTTATGCTTGGAACAAACTGGCAAATATATTATTCCTTGAGTCTCCTGCTGGCGTTGGTTTTTCTTATTCTAATAAAACATCAGATTTGTACACAGTTGGTGACCAGAAAAACGCTGAGGATTCATATATTTTTCTTGTTAATTGGTTGGAAAGATTTCCTCAGTATAAGCATAGAGAACTCTACATTGGTGGGATAAGTTATGCAGGTCATTATGTTCCTCAATTGGCTCAAATTGTTTACGAGAGAAACAAGGGAATCAATAATCCAGTTATCAATCTTAAGGGATTTTTGGTTGGAAATGGTGTTATTGATGATTATCATGATTTAGTCGGAACATTTGAGTACTGGTGGACACATGGTTTGATTTCAGATTCTACGTATAAACTTCTAGGAACTGCGTGTGACTCTGGATCTTCTTTGCATCCATCAGCGCAATGTACGCAGGCTCGTAAAGTTGCAACTGCTGAGCAAGGAAACATTGATCCATATAGCATTTACTTTCCGCTTTGTAACAATACATCATCGATTAATCGCAGCTTGAATGGTTGTTATCCATGGATGTCTAGAGTAGATGATCCATGTTTCCAAACGTATTCTGATTTGTATTTCAACCGTCCGGAAGTTCAGAAGGCACTCCATGCCAATGTAACAGGGATTCCATATACATGGAAGGGATGCAGTGATATTGTTATGAATAATTGGGCTGATTCGGCATTGTCTGTGCTTCCTATATATCGTGAACTTATCAATGCTAGTCTAAGGATATGGGTATTCAGTGGAGACGCTGATGCTATAGTACCACTAACCGCCACTCGACGTTCTATTAATGCATTGAAGCTTCCAACCATCGTGAATTGGTATCCTTGGTATGACAGTGGCAAGGTTGCTGGATGGAGTCAAGTTTATAAAGGGCTAACATTGGTGACAGTAAGAGGAGCTGGACATAAGGTTGCTTTTCATAAGCCTCGCGAGGCGTTTACTCTTTTTAGATCATATTTGGAGAACAAGAACATGCCATCCTCAAGTTGA 1383 0.3919 MGYYYYYSLLCVVLFLSIQISLASSTEDQKRDKITELPGQPKNVGFDQYSGYITVNEPNGRALFYWLTEAPLSSEPDSKPLVLWLSNGAGCSAISYGAAEEIGPFHIKPDGKTLYSNPYAWNKLANILFLESPAGVGFSYSNKTSDLYTVGDQKNAEDSYIFLVNWLERFPQYKHRELYIGGISYAGHYVPQLAQIVYERNKGINNPVINLKGFLVGNGVIDDYHDLVGTFEYWWTHGLISDSTYKLLGTACDSGSSLHPSAQCTQARKVATAEQGNIDPYSIYFPLCNNTSSINRSLNGCYPWMSRVDDPCFQTYSDLYFNRPEVQKALHANVTGIPYTWKGCSDIVMNNWADSALSVLPIYRELINASLRIWVFSGDADAIVPLTATRRSINALKLPTIVNWYPWYDSGKVAGWSQVYKGLTLVTVRGAGHKVAFHKPREAFTLFRSYLENKNMPSSS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05320 460 Gene3D alpha/beta hydrolase 28 290 IPR029058 -
Vivi4g05320 460 FunFam Carboxypeptidase 28 290 - -
Vivi4g05320 460 SUPERFAMILY alpha/beta-Hydrolases 29 456 IPR029058 -
Vivi4g05320 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185|GO:0006508
Vivi4g05320 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 191 IPR001563 GO:0004185|GO:0006508
Vivi4g05320 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 423 436 IPR001563 GO:0004185|GO:0006508
Vivi4g05320 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185|GO:0006508
Vivi4g05320 460 Gene3D - 312 348 - -
Vivi4g05320 460 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 33 440 IPR001563 GO:0004185|GO:0006508
Vivi4g05320 460 Gene3D - 359 452 - -
Vivi4g05320 460 FunFam Carboxypeptidase 309 456 - -
Vivi4g05320 460 Pfam Serine carboxypeptidase 38 453 IPR001563 GO:0004185|GO:0006508
Vivi4g05320 460 FunFam Carboxypeptidase 359 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05320 Vivi-Chr4 186295791 186298237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05320 322 454 Calmodulin-binding Proteins AT2G22960 29.851 1.00e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05320 K16297 - gmx:100805722 743.421