Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05317 ATGACAGAGAGAAACCCAATAGCAGCAAATTCATCATCACCTGATAGTGATTTTAGCAACCAGCAATGGGGTTTTGAACTCTCTGACTACATGAGTTTCGATGACATTGATTGGCAACAAGTTGATCCTACCACTTATAATCAGTCTTTTGTTTATCAAGCCAACGGAGTAGCCGGTGGTAGCAGCAACGTTGAGGGGTCTTCTAGTTATACCAGGGATACAAATACTAGAATGAGTGGAACAGCCCTAACCCAAGGTACATATTGGAAGAGTGAAGTGAAGGAGAGAGTTGCATTCAAAACAATGACAGAGATTGAGATACTTGACGATGGTTACAGATGGAGGAAGTATGGAAAGAAAATGGTCAAGAACAGCCCTAATCCAAGGAATTATTATAGGTGTTCAGTGGAGGGATGTCCGGTGAAAAAGAGAGTTGAGAAAGATAAGGATGATTCGAGATATGTGATCACAACCTATGAAGGCATGCACACGCACCCAACTTCTTCATAG 510 0.4176 MTERNPIAANSSSPDSDFSNQQWGFELSDYMSFDDIDWQQVDPTTYNQSFVYQANGVAGGSSNVEGSSSYTRDTNTRMSGTALTQGTYWKSEVKERVAFKTMTEIEILDDGYRWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVEKDKDDSRYVITTYEGMHTHPTSS 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05317 169 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 75 166 IPR044810 GO:0003700
Vivi4g05317 169 SMART WRKY_cls 108 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi4g05317 169 MobiDBLite consensus disorder prediction 1 20 - -
Vivi4g05317 169 FunFam WRKY transcription factor 57 94 168 - -
Vivi4g05317 169 SUPERFAMILY WRKY DNA-binding domain 100 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi4g05317 169 Pfam WRKY DNA -binding domain 109 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi4g05317 169 Gene3D WRKY domain 95 161 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi4g05317 169 ProSiteProfiles WRKY domain profile. 103 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05317 Vivi-Chr4 186266431 186267319 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05317 47 165 WRKY Transcription Factor Family AT5G26170 57.031 1.70e-42 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi4g05317 WRKY 7.8e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05317 4 186266431 186267319 Vivi4g05317 4 186266431 186267319 ECH