Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05316 ATGATCAGTTGCACTAACAAAATGACAGAGAGAAATCCAGTAGCAGCAAATTCATCATCACCTGACAGTGATTTTAGCAACCAGCAATGGTCTTTTGAACTATCTGACTACATGTGTTTCGATGACATTGATTGGCAACAAATTGATCCTACAACTACTAATCAATCTTTTGTTTATCAATCCAACGAAGTAGCAGGTGGCTGCAACATTGAGTGGTCTTCTACTCATACCAGAGATACTAATAACATTAATATGAGTGGAGGAGTGAATAGTTGGAAGAAGGAAGTTAAGGAAAGAGTTGCATTCAAAACAATGACAGAGGTTGAAATACTTGATGATGGTTACAGATGGAGGAAGTATGGAAAGAAAATGGTCAAAAACAGCCCTAATCCAAGGAATTATTATAGGTGTTCAGTGGAGGGATGTCCTGTGAAAAAGAGAGTTGAGAGAGATAAAGATGATTCAAGATATGTCATTACAACCTACGAAGGCATGCACACACACCCAACTTCTTCATAG 519 0.3796 MISCTNKMTERNPVAANSSSPDSDFSNQQWSFELSDYMCFDDIDWQQIDPTTTNQSFVYQSNEVAGGCNIEWSSTHTRDTNNINMSGGVNSWKKEVKERVAFKTMTEVEILDDGYRWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVERDKDDSRYVITTYEGMHTHPTSS 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05316 172 Pfam WRKY DNA -binding domain 112 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi4g05316 172 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 29 169 IPR044810 GO:0003700
Vivi4g05316 172 Gene3D WRKY domain 98 164 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi4g05316 172 SMART WRKY_cls 111 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi4g05316 172 MobiDBLite consensus disorder prediction 1 25 - -
Vivi4g05316 172 ProSiteProfiles WRKY domain profile. 106 171 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi4g05316 172 SUPERFAMILY WRKY DNA-binding domain 103 170 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi4g05316 172 FunFam WRKY transcription factor 57 97 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05316 Vivi-Chr4 186258997 186259932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05316 54 168 WRKY Transcription Factor Family AT5G26170 56.349 1.20e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi4g05316 WRKY 3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05316 - - gmx:100796836 186.808