Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05310 ATGGAAGAATTGTTGTATGTGGTTACAGTGCCATTGAGAGTAGGTAACTTCGTCTGCGATAACTCGGTCATAGTTATACACATGGATGTATCCAGATTTAAAGTAATGGAAGATGCAGGGTCGTTGTCTAATTCTGTAAGTAAGGTTTCCACCGAGACAGTTGTAGGTTCGGACTATAGCCGTAATGTTGAAATAGGTGTCACAGAAGTCACGGCACCAGAATTGGATAGGGAAGGAGAAGTTCCTTTGGTGGAAATGATATCCCAAAATAAAAGTGATTTGGTTTCTAGTGATGTAGCGTTGGTTCCAGAAAGCGAGGAGGATGATTCGTTATCATTGGAAGGTGAACAGTTTATTGATAGCTCGTGTTCTCTATCGGTTGTCAGTGAGAATAGTAGTATAGGTGGAGAAGAGTTTGTTGCTTCTGATGCTACTTCAGAAGTTGGAACACCACGTTCGGTATATGTAGAGAAGATTGTCGGTCCTGTCAATATTGTTGCTCACGCCGCTGATTTGGGGGAGTCGAATGTTGACACGGATATTGTGAGTGAATCCCTTACCGTGGCTGTGAGTCTTGACCAAGAGATTGGAGTTGAGTCGGACCTAAAACCTACTACGGTTGTTGTTGATCATCAGATGCCTCAGGAAGAGGGAACGAGTGTAACCGTTGTCCGGAGTGTTTTTGAATTGGATTATACCCCATTATGGGGATTCATATCGCTATGTGGAAGAAGACCTGAAATGGAAGACGCATTTGCAACTGTTCCTCAATTCTTGAAAATTCCTATTCAGATGTTGATTGGTGATCGAGTACCTGACGGAATAAACCGATGTTTTAGGCCGCAGATGACTCATTTCTTTGGAGTATATGATGGCCATGGAGGCTCTCAGGTGGCAAATTATTGTCGTGAACGCCTTCATTTGGCATTGGCTGAGGAAATAGAACTTGTCAAGGAAGGTTTAATCAATGGAAGTACCGTGGATAGTTGCCAAGATCAGTGGAACAAAGCATTCACCAACTGTTTCTTAAAGGTTGATGCTGAAATTGGAGGAACGGCCAATAATGAAGCTGTTGCGCCAGAAACGGTTGGTTCCACTGCAGTAGTTGCTCTAATATGTTCATCTCATATCATAGTTGCAAATTGTGGTGATTCAAGAGCCGTTCTTTGTCGGGGCAAAGAACCAATGGCGTTATCAGTGGACCATAAACCAAACCGAGAAGATGAATATGCTAGAATTGAAGCAGCCGGAGGAAAAGTGATACAATGGAATGGTCATCGTGTATTCGGTGTTCTTGCAATGTCAAGGTCTATCGGTGACAGATATTTGAAACCGTGGATTATCCCAGAACCAGAAGTTCAATTCATTCCACGTGCAAAAGAAGACGAATGTCTCATTCTAGCCAGCGACGGTCTATGGGATGTGATGACAAATGAAGAGATCTGTGACTTGGCTCGAAAACGAATACTTCTTTGGTACAAGAAAAACAGCTCAGAACTACCATCAGAAAGGGGGGAGACGAGTGACCCCGCAGCTCAAGCTGCAGCAGAGTTCCTCTCAAATCGTGCTCTTCAGAAAGGAAGCAAAGACAACATAACCGTGATAGTCGTGGATCTGAAACCTCAACGAAAGTATAAGAACAAGACATGA 1650 0.4333 MEELLYVVTVPLRVGNFVCDNSVIVIHMDVSRFKVMEDAGSLSNSVSKVSTETVVGSDYSRNVEIGVTEVTAPELDREGEVPLVEMISQNKSDLVSSDVALVPESEEDDSLSLEGEQFIDSSCSLSVVSENSSIGGEEFVASDATSEVGTPRSVYVEKIVGPVNIVAHAADLGESNVDTDIVSESLTVAVSLDQEIGVESDLKPTTVVVDHQMPQEEGTSVTVVRSVFELDYTPLWGFISLCGRRPEMEDAFATVPQFLKIPIQMLIGDRVPDGINRCFRPQMTHFFGVYDGHGGSQVANYCRERLHLALAEEIELVKEGLINGSTVDSCQDQWNKAFTNCFLKVDAEIGGTANNEAVAPETVGSTAVVALICSSHIIVANCGDSRAVLCRGKEPMALSVDHKPNREDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVQFIPRAKEDECLILASDGLWDVMTNEEICDLARKRILLWYKKNSSELPSERGETSDPAAQAAAEFLSNRALQKGSKDNITVIVVDLKPQRKYKNKT 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05310 549 Gene3D - 222 549 IPR036457 -
Vivi4g05310 549 CDD PP2Cc 240 539 IPR001932 -
Vivi4g05310 549 ProSiteProfiles PPM-type phosphatase domain profile. 235 539 IPR001932 -
Vivi4g05310 549 ProSitePatterns PPM-type phosphatase domain signature. 286 294 IPR000222 GO:0043169
Vivi4g05310 549 SMART PP2C_4 221 537 IPR001932 -
Vivi4g05310 549 PANTHER PROTEIN PHOSPHATASE 189 539 IPR015655 GO:0004722|GO:0006470
Vivi4g05310 549 FunFam Protein phosphatase 2C 16 223 549 - -
Vivi4g05310 549 Pfam Protein phosphatase 2C 279 532 IPR001932 -
Vivi4g05310 549 SUPERFAMILY PP2C-like 221 541 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05310 Vivi-Chr4 186218973 186222808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05310 1 549 PP2C-type Phosphatase Gene Family AT1G17550 47.772 9.60e-162 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05310 K14497 - gmx:100805281 806.594