Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05308 ATGAAAGAAGCCGTAATCAATGATAGTGACATTGCTAGAGGAATTTCGGAATATGCAAAGAGGAATCATGTCCAACATATCATTGTTGGTGCTCCCTCTAGCTACACCAAGAATGTTTTGTCAAGGTCTCTAAACATGAGAACCATAAGCAAAAAATTTAAAGGCCACGACGATGTACCGACAGCAATTATGAAATCAGCTCCGGATTATAGTTCTGTCTACGTAATCGCGAAAGAAAAGATAGTAGAAACTCGACCAGCAACAGCGCAGTTGGAAAATGCAGTTTCAACAAATGACCTAAGGTCAAGCACATTTAAAAGAGGAGGAAGCACTAATAGTAGTAGATCAGGAAAATCACCAGGATTATCACCCCTACATGATAAACTAAAGAGTTCTTCATCTACTCATAAATCATTGGAGAGTATCGATTTATCGAATCGTGGCCATAGATCATCCTTTAATCACACTTCAAGCTTAAATGAAAATGAATCATCTCGCTTACATAAATATGGGCTGGATGCGCCGAAATTAGAGAGGGGTTCGAGCATGGCATCAGATTCTCAAGTATTAGGAGACATGGCAGCTGAGATGAAAGAATTGAGACTCCAACTTAGGCAAACTATGGAAATGTATAACTCAGCTTGCAAAGAAGCAATTTTAGCAAAAAATAAGGCTAAAGAGATTAATAAATGGAAACTAGAGGAGCGAACGGTTGAGGAAGTTATGATGTCTCGAGAAGCAGCATTAGCAATGGCGGAAATAGAGAAAGCTAAAGCAGTGGCTGCATTGAAATCAGTAGATGAAGCTATGAAAATGGCTGAAAAAGAAACTCAAAAAAGATTACATGCAGAGAGAAAGGCTAGGAGAGAAATAGAAGAGCGAGATCAAGCACTAAACGTGATAGCTCGTACAGATATTCGATATAGACAATACACCTTAGAGGAGATTGAAAATGCTACTAAAAATTTCTCATTATCAATGAAAATAGGTGAAGGTGGATATGGACCTGTGTTTAAAGGTCAACTTGATCATACACATGTTGCTATCAAGATTTTGAGACCTGATGCTCACCAGGGTAGAAAACAGTTCCTGCAAGAGGTTGAGGTATTATGCAACATAAGACATCCAAATATGGTTCTCCTCCTAGGTGCTTGTCAAGATTATGGATGTTTGGTATATGAATACATGGACAATGGTAGTTTAGAAGACAGATTATTTAGAAAACATAATAGCCCTCCAATTCCATGGCAAAAACGTTTAGAAATATGTTACGAAATCGCGACTGCGCTTCTTTTCCTTCACCAAACAAAACCAGAATCCATTGTTCATAGAGACCTTAAACCAGCCAACATTCTCCTAGACAAAAATTTTGTTAGCAAAATAAGTGATGTTGGTTTATCAAGATTAGTGCCACCTTCTGTAGCTGATTCTGTCACACAATATCACATGACTTCAGCAGCTGGAACATTATGTTACATTGATCCTGAATATCAACAAACAGGAAAGTTGACGGCGAAATCTGATATTTATTCTTTAGGTATCATGTTTCTACAAATTATCACTGCTAGGCCTCCAATGGGACTTTCTCATCAAGTTAAAAAGGCTATTGAGAATGGAAATTTTGTCGATATGCTTGATCCCGTTGTTATGGATTGGCCTACTGATGAAGCTTTGGCGTTTGCTAAACTTGCATTGAGTTGTGCTGAGCTTAGTAAGAAAGATAGACCTGATCTTGCATTAGAAGTGATTCCGGAGCTTAGTCGATTAAGAGACTTGGGATGTAAGTTACAGAACTGTCAACAGAATTGGAGCCATGCGCCGCGTCCTCCTACGCCTCCTCGTCCAAGAAGTCCTCCACTTTGA 1863 0.3886 MKEAVINDSDIARGISEYAKRNHVQHIIVGAPSSYTKNVLSRSLNMRTISKKFKGHDDVPTAIMKSAPDYSSVYVIAKEKIVETRPATAQLENAVSTNDLRSSTFKRGGSTNSSRSGKSPGLSPLHDKLKSSSSTHKSLESIDLSNRGHRSSFNHTSSLNENESSRLHKYGLDAPKLERGSSMASDSQVLGDMAAEMKELRLQLRQTMEMYNSACKEAILAKNKAKEINKWKLEERTVEEVMMSREAALAMAEIEKAKAVAALKSVDEAMKMAEKETQKRLHAERKARREIEERDQALNVIARTDIRYRQYTLEEIENATKNFSLSMKIGEGGYGPVFKGQLDHTHVAIKILRPDAHQGRKQFLQEVEVLCNIRHPNMVLLLGACQDYGCLVYEYMDNGSLEDRLFRKHNSPPIPWQKRLEICYEIATALLFLHQTKPESIVHRDLKPANILLDKNFVSKISDVGLSRLVPPSVADSVTQYHMTSAAGTLCYIDPEYQQTGKLTAKSDIYSLGIMFLQIITARPPMGLSHQVKKAIENGNFVDMLDPVVMDWPTDEALAFAKLALSCAELSKKDRPDLALEVIPELSRLRDLGCKLQNCQQNWSHAPRPPTPPRPRSPPL 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05308 620 PANTHER OS02G0152300 PROTEIN 2 595 - -
Vivi4g05308 620 Coils Coil 190 217 - -
Vivi4g05308 620 Coils Coil 256 294 - -
Vivi4g05308 620 MobiDBLite consensus disorder prediction 606 620 - -
Vivi4g05308 620 MobiDBLite consensus disorder prediction 135 165 - -
Vivi4g05308 620 MobiDBLite consensus disorder prediction 99 120 - -
Vivi4g05308 620 Gene3D Transferase(Phosphotransferase) domain 1 396 603 - -
Vivi4g05308 620 SMART serkin_6 323 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05308 620 Pfam Protein kinase domain 325 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05308 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Vivi4g05308 620 MobiDBLite consensus disorder prediction 600 620 - -
Vivi4g05308 620 SUPERFAMILY Protein kinase-like (PK-like) 304 578 IPR011009 -
Vivi4g05308 620 MobiDBLite consensus disorder prediction 99 166 - -
Vivi4g05308 620 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 296 395 - -
Vivi4g05308 620 Gene3D Phosphorylase Kinase; domain 1 301 395 - -
Vivi4g05308 620 ProSiteProfiles Protein kinase domain profile. 323 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05308 Vivi-Chr4 186135151 186138394 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05308 1 593 Receptor kinase-like Gene Family AT5G12000 54.133 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vivi4g05308 PK_Tyr_Ser-Thr 5.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05308 - - gmx:100786386 716.842