LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi4g05307	ATGAAAATGCCTACCAGTGGTAGCCTTAATAGACCGAACACAAACCTCGTAATGGTGGCTGTAGGCAAAGACAAGAACAGTGGCCATGCTTTTCGTTGGACAACTAATAATATTGATAACCCTATCATCATTGCAGTTCATGTTAAACATAAAGATATTCCTCATCAAGGTCAAGATCGCGAAGGCGCCAATGTTTTTCCTCCTGACGAAGATGATGTAGCCAATGTTTTCGAACCCTTACGGGAAATGTGTAATGATAAAGTGGTAAAGATGAAAGAAGCCGTAATCAATGATAGTGACATTGCTAGAGGAATTTCGGAATATGCAAAGAGGAATCATGTCCAACATATCATTGTTGGTGCTCCCTCTAGCTACACCAAGAATGTTTTGTCAAGGTCTCTAAACATGAGAACCATAAGCAAAAAATTTAAAGGCCACGACGATGTACCGACAGCAATTATGAAATCAGCTCCGGATTATAGTTCTGTCTACGTAATCGCGAAAGAAAAGATAGTAGAAACTCGACCAGCAACAGCGCAGTTGGAAAATGCAGTTTCAACAAATGACCTAAGGTCAAGCACATTTAAAAGAGGAGGAAGCACTAATAGTAGTAGATCAGGAAAATCACCAGGATTATCACCCCTACATGATAAACTAAAGAGTTCTTCATCTACTCATAAATCATTGGAGAGTATCGATTTATCGAATCGTGGCCATAGATCATCCTTTAATCACACTTCAAGCTTAAATGAAAATGAATCATCTCGCTTACATAAATATGGGCTGGATGCGCCGAAATTAGAGAGGGGTTCGAGCATGGCATCAGATTCTCAAGTATTAGGAGACATGGCAGCTGAGATGAAAGAATTGAGACTCCAACTTAGGCAAACTATGGAAATGTATAACTCAGCTTGCAAAGAAGCAATTTTAGCAAAAAATAAGGCTAAAGAGATTAATAAATGGAAACTAGAGGAGCGAACGGTTGAGGAAGTTATGATGTCTCGAGAAGCAGCATTAGCAATGGCGGAAATAGAGAAAGCTAAAGCAGTGGCTGCATTGAAATCAGTAGATGAAGCTATGAAAATGGCTGAAAAAGAAACTCAAAAAAGATTACATGCAGAGAGAAAGGCTAGGAGAGAAATAGAAGAGCGAGATCAAGCACTAAACGTGATAGCTCGTACAGATATTCGATATAGACAATACACCTTAGAGGAGATTGAAAATGCTACTAAAAATTTCTCATTATCAATGAAAATAGGTGAAGGTGGATATGGACCTGTGTTTAAAGGTCAACTTGATCATACACATGTTGCTATCAAGATTTTGAGACCTGATGCTCACCAGGGTAGAAAACAGTTCCTGCAAGAGGTTGAGGTATTATGCAACATAAGACATCCAAATATGGTTCTCCTCCTAGGTGCTTGTCAAGATTATGGATGTTTGGTATATGAATACATGGACAATGGTAGTTTAGAAGACAGATTATTTAGAAAACATAATAGCCCTCCAATTCCATGGCAAAAACGTTTAGAAATATGTTACGAAATCGCGACTGCGCTTCTTTTCCTTCACCAAACAAAACCAGAATCCATTGTTCATAGAGACCTTAAACCAGCCAACATTCTCCTAGACAAAAATTTTGTTAGCAAAATAAGTGATGTTGGTTTATCAAGATTAGTGCCACCTTCTGTAGCTGATTCTGTCACACAATATCACATGACTTCAGCAGCTGGAACATTATGTTACATTGATCCTGAATATCAACAAACAGGAAAGTTGACGGCGAAATCTGATATTTATTCTTTAGGTATCATGTTTCTACAAATTATCACTGCTAGGCCTCCAATGGGACTTTCTCATCAAGTTAAAAAGGCTATTGAGAATGGAAATTTTGTCGATATGCTTGATCCCGTTGTTATGGATTGGCCTACTGATGAAGCTTTGGCGTTTGCTAAACTTGCATTGAGTTGTGCTGAGCTTAGTAAGAAAGATAGACCTGATCTTGCATTAGAAGTGATTCCGGAGCTTAGTCGATTAAGAGACTTGGGATGTAAGTTACAGAACTGTCAACAGAATTGGAGCCATGCGCCGCGTCCTCCTACGCCTCCTCGTCCAAGAAGTCCTCCACTTTGA	2133	0.391	MKMPTSGSLNRPNTNLVMVAVGKDKNSGHAFRWTTNNIDNPIIIAVHVKHKDIPHQGQDREGANVFPPDEDDVANVFEPLREMCNDKVVKMKEAVINDSDIARGISEYAKRNHVQHIIVGAPSSYTKNVLSRSLNMRTISKKFKGHDDVPTAIMKSAPDYSSVYVIAKEKIVETRPATAQLENAVSTNDLRSSTFKRGGSTNSSRSGKSPGLSPLHDKLKSSSSTHKSLESIDLSNRGHRSSFNHTSSLNENESSRLHKYGLDAPKLERGSSMASDSQVLGDMAAEMKELRLQLRQTMEMYNSACKEAILAKNKAKEINKWKLEERTVEEVMMSREAALAMAEIEKAKAVAALKSVDEAMKMAEKETQKRLHAERKARREIEERDQALNVIARTDIRYRQYTLEEIENATKNFSLSMKIGEGGYGPVFKGQLDHTHVAIKILRPDAHQGRKQFLQEVEVLCNIRHPNMVLLLGACQDYGCLVYEYMDNGSLEDRLFRKHNSPPIPWQKRLEICYEIATALLFLHQTKPESIVHRDLKPANILLDKNFVSKISDVGLSRLVPPSVADSVTQYHMTSAAGTLCYIDPEYQQTGKLTAKSDIYSLGIMFLQIITARPPMGLSHQVKKAIENGNFVDMLDPVVMDWPTDEALAFAKLALSCAELSKKDRPDLALEVIPELSRLRDLGCKLQNCQQNWSHAPRPPTPPRPRSPPL	710

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi4g05307	710	Gene3D	Phosphorylase Kinase; domain 1	391	485	-	-
	Vivi4g05307	710	SMART	serkin_6	413	673	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi4g05307	710	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	531	543	IPR008271	GO:0004672\|GO:0006468
	Vivi4g05307	710	CDD	STKc_IRAK	419	679	-	-
	Vivi4g05307	710	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	386	485	-	-
	Vivi4g05307	710	Pfam	Protein kinase domain	415	666	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi4g05307	710	MobiDBLite	consensus disorder prediction	696	710	-	-
	Vivi4g05307	710	MobiDBLite	consensus disorder prediction	225	255	-	-
	Vivi4g05307	710	PANTHER	OS02G0152300 PROTEIN	17	685	-	-
	Vivi4g05307	710	MobiDBLite	consensus disorder prediction	189	210	-	-
	Vivi4g05307	710	SUPERFAMILY	Protein kinase-like (PK-like)	394	668	IPR011009	-
	Vivi4g05307	710	ProSiteProfiles	Protein kinase domain profile.	413	676	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi4g05307	710	Gene3D	Transferase(Phosphotransferase) domain 1	486	693	-	-
	Vivi4g05307	710	Coils	Coil	346	384	-	-
	Vivi4g05307	710	Gene3D	HUPs	9	123	IPR014729	-
	Vivi4g05307	710	MobiDBLite	consensus disorder prediction	690	710	-	-
	Vivi4g05307	710	MobiDBLite	consensus disorder prediction	189	256	-	-
	Vivi4g05307	710	Coils	Coil	280	307	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi4g05307	Vivi-Chr4	186134461	186138394	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi4g05307	91	683	Receptor kinase-like Gene Family	AT5G12000	54.133	0.0	624

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Vivi4g05307		PK_Tyr_Ser-Thr	7.8e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi4g05307	-		-	gmx:100786386	829.706