Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05305 ATGCTTTTCGTTGGACAACTAATAATATTGATAACCCTATCATCATTGCAGTTCATGTTAAACATAAAGATATTCCTCATCGTAGAAGAAGGTCAAGATCGCGAAGGCGCCAATGTTTTTCCTCCTGACGAAGATGATGTAGCCAATGTTTTCGAACCCTTACGGGAAATGTGTAATGATAAAGTGGTAAAGATGAAAGAAGCCGTAATCAATGATAGTGACATTGCTAGAGGAATTTCGGAATATGCAAAGAGGAATCATGTCCAACATATCATTGTTGGTGCTCCCTCTAGCTACACCAAGAATGTTTTGTCAAGGTCTCTAAACATGAGAACCATAAGCAAAAAATTTAAAGGCCACGACGATGTACCGACAGCAATTATGAAATCAGCTCCGGATTATAGTTCTGTCTACGTAATCGCGAAAGAAAAGATAGTAGAAACTCGACCAGCAACAGCGCAGTTGGAAAATGCAGTTTCAACAAATGACCTAAGGTCAAGCACATTTAAAAGAGGAGGAAGCACTAATAGTAGTAGATCAGGAAAATCACCAGGATTATCACCCCTACATGATAAACTAAAGAGTTCTTCATCTACTCATAAATCATTGGAGAGTATCGATTTATCGAATCGTGGCCATAGATCATCCTTTAATCACACTTCAAGCTTAAATGAAAATGAATCATCTCGCTTACATAAATATGGGCTGGATGCGCCGAAATTAGAGAGGGGTTCGAGCATGGCATCAGATTCTCAAGTATTAGGAGACATGGCAGCTGAGATGAAAGAATTGAGACTCCAACTTAGGCAAACTATGGAAATGTATAACTCAGCTTGCAAAGAAGCAATTTTAGCAAAAAATAAGGCTAAAGAGATTAATAAATGGAAACTAGAGGAGCGAACGGTTGAGGAAGTTATGATGTCTCGAGAAGCAGCATTAGCAATGGCGGAAATAGAGAAAGCTAAAGCAGTGGCTGCATTGAAATCAGTAGATGAAGCTATGAAAATGGCTGAAAAAGAAACTCAAAAAAGATTACATGCAGAGAGAAAGGCTAGGAGAGAAATAGAAGAGCGAGATCAAGCACTAAACGTGATAGCTCGTACAGATATTCGATATAGACAATACACCTTAGAGGAGATTGAAAATGCTACTAAAAATTTCTCATTATCAATGAAAATAGGTGAAGGTGGATATGGACCTGTGTTTAAAGGTCAACTTGATCATACACATGTTGCTATCAAGATTTTGAGACCTGATGCTCACCAGGGTAGAAAACAGTTCCTGCAAGAGGTTGAGGTATTATGCAACATAAGACATCCAAATATGGTTCTCCTCCTAGGTGCTTGTCAAGATTATGGATGTTTGGTATATGAATACATGGACAATGGTAGTTTAGAAGACAGATTATTTAGAAAACATAATAGCCCTCCAATTCCATGGCAAAAACGTTTAGAAATATGTTACGAAATCGCGACTGCGCTTCTTTTCCTTCACCAAACAAAACCAGAATCCATTGTTCATAGAGACCTTAAACCAGCCAACATTCTCCTAGACAAAAATTTTGTTAGCAAAATAAGTGATGTTGGTTTATCAAGATTAGTGCCACCTTCTGTAGCTGATTCTGTCACACAATATCACATGACTTCAGCAGCTGGAACATTATGTTACATTGATCCTGAATATCAACAAACAGGAAAGTTGACGGCGAAATCTGATATTTATTCTTTAGGTATCATGTTTCTACAAATTATCACTGCTAGGCCTCCAATGGGACTTTCTCATCAAGTTAAAAAGGCTATTGAGAATGGAAATTTTGTCGATATGCTTGATCCCGTTGTTATGGATTGGCCTACTGATGAAGCTTTGGCGTTTGCTAAACTTGCATTGAGTTGTGCTGAGCTTAGTAAGAAAGATAGACCTGATCTTGCATTAGAAGTGATTCCGGAGCTTAGTCGATTAAGAGACTTGGGATGTAAGTTACAGAACTGTCAACAGAATTGGAGCCATGCGCCGCGTCCTCCTACGCCTCCTCGTCCAAGAAGTCCTCCACTTTGA 2055 0.3878 MLFVGQLIILITLSSLQFMLNIKIFLIVEEGQDREGANVFPPDEDDVANVFEPLREMCNDKVVKMKEAVINDSDIARGISEYAKRNHVQHIIVGAPSSYTKNVLSRSLNMRTISKKFKGHDDVPTAIMKSAPDYSSVYVIAKEKIVETRPATAQLENAVSTNDLRSSTFKRGGSTNSSRSGKSPGLSPLHDKLKSSSSTHKSLESIDLSNRGHRSSFNHTSSLNENESSRLHKYGLDAPKLERGSSMASDSQVLGDMAAEMKELRLQLRQTMEMYNSACKEAILAKNKAKEINKWKLEERTVEEVMMSREAALAMAEIEKAKAVAALKSVDEAMKMAEKETQKRLHAERKARREIEERDQALNVIARTDIRYRQYTLEEIENATKNFSLSMKIGEGGYGPVFKGQLDHTHVAIKILRPDAHQGRKQFLQEVEVLCNIRHPNMVLLLGACQDYGCLVYEYMDNGSLEDRLFRKHNSPPIPWQKRLEICYEIATALLFLHQTKPESIVHRDLKPANILLDKNFVSKISDVGLSRLVPPSVADSVTQYHMTSAAGTLCYIDPEYQQTGKLTAKSDIYSLGIMFLQIITARPPMGLSHQVKKAIENGNFVDMLDPVVMDWPTDEALAFAKLALSCAELSKKDRPDLALEVIPELSRLRDLGCKLQNCQQNWSHAPRPPTPPRPRSPPL 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05305 684 Coils Coil 254 281 - -
Vivi4g05305 684 Coils Coil 320 358 - -
Vivi4g05305 684 SMART serkin_6 387 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05305 684 Gene3D Phosphorylase Kinase; domain 1 365 459 - -
Vivi4g05305 684 Gene3D Transferase(Phosphotransferase) domain 1 460 667 - -
Vivi4g05305 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 505 517 IPR008271 GO:0004672|GO:0006468
Vivi4g05305 684 SUPERFAMILY Protein kinase-like (PK-like) 368 642 IPR011009 -
Vivi4g05305 684 MobiDBLite consensus disorder prediction 670 684 - -
Vivi4g05305 684 MobiDBLite consensus disorder prediction 199 229 - -
Vivi4g05305 684 MobiDBLite consensus disorder prediction 163 184 - -
Vivi4g05305 684 Pfam Protein kinase domain 389 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05305 684 PANTHER OS02G0152300 PROTEIN 44 659 - -
Vivi4g05305 684 ProSiteProfiles Protein kinase domain profile. 387 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05305 684 MobiDBLite consensus disorder prediction 163 230 - -
Vivi4g05305 684 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 360 459 - -
Vivi4g05305 684 MobiDBLite consensus disorder prediction 664 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05305 Vivi-Chr4 186134461 186138394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05305 65 657 Receptor kinase-like Gene Family AT5G12000 54.133 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vivi4g05305 PK_Tyr_Ser-Thr 7.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05305 - - gmx:100786386 764.992