Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05303 ATGACTACAAAAAAGATAACATGGAAATCTATGATCTTGATCTTAAATTGTTACAAGAGTGAAAACCCTTTGGAGGAATCAAAGGAACATGTTTTGAAACAAGGTTCTTTTCAAAGACTATGTTTATCAGATATAAGCAATTCAAGTTCAACTCAAGCTATTGAAGATATTTCAGTTTCTTTTGCTGGCTCTAAGCTTCATGCATTCACACTTGAGGAGCTTAAAGAAGCAACACATGGTTTTTCTTGGAGTAGTATGTTGGGTGAAGGCGGTTTTGGACCGGTTTATAAAGGTTTTGTTGATGATAAAGTTAGACAAGGTTTAAAGGCTCAAACTGTTGCTGTTAAATGTTTGGATTTGGATGGTTTGCAAGGTCATAGAGAGTGGCTGGCAGAGATTATATTTCTTGGACAACTAAGGCATCACCATCTTGTGAAGCTAATTGGATATTGTTGCGAAGATGAACACCGGCTTTTGGTGTATGAATACATGCCAAGAGGTAGCTTGGAGAGTCAACTATTCAGAAGATATGCTGCTGCTATGCCATGGTCAACAAGGATGAAGATTGCATTAGGAGCTGCTAAGGGTTTGGCTTTCCTTCATGAAGCAGATAAGCCTGTGATATATAGAGATTTCAAAGCTTCAAATATCTTACTAGACTCTGATTATACAGCTAAACTCTCGGATTTTGGACTAGCGAAGGATGGCCCTGAAGGAGAAGAAACACATGTCACGACGCGTGTAATGGGAACACATGGTTATGCTGCTCCTGAGTACATCATGACAGGTCACCTTACAACAAAGAGTGATGTGTATAGCTATGGCGTCGTTCTATTGGAATTGCTTACCGGAAGAAGGGTAGTGGACAAGTCCTTAGAATCAAAAAGAGGTAAGAGCTTGGTAGAATGGGCAAGACCTATGTTGAGAGATCAAAAGAAACTTGACAGAATCATAGACCGTAGACTTGAAGGACAGTTTCCTATGAAAGGAGCTTTGAAAGTTGCTATGTTGGCTTTTAAATGTTTGAGTCATCACCCAAATCCAAGACCTTGTATGAGTGATGTTGTTAAGGTCTTGGAACCACTTCAAGATTTTGATGATGTTTTTGTAGGTCCATTTGTATATGTTGCTGTAAATGAAAATGGTGACAAAGTCTCAGCCATTTGA 1167 0.3899 MTTKKITWKSMILILNCYKSENPLEESKEHVLKQGSFQRLCLSDISNSSSTQAIEDISVSFAGSKLHAFTLEELKEATHGFSWSSMLGEGGFGPVYKGFVDDKVRQGLKAQTVAVKCLDLDGLQGHREWLAEIIFLGQLRHHHLVKLIGYCCEDEHRLLVYEYMPRGSLESQLFRRYAAAMPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKASNILLDSDYTAKLSDFGLAKDGPEGEETHVTTRVMGTHGYAAPEYIMTGHLTTKSDVYSYGVVLLELLTGRRVVDKSLESKRGKSLVEWARPMLRDQKKLDRIIDRRLEGQFPMKGALKVAMLAFKCLSHHPNPRPCMSDVVKVLEPLQDFDDVFVGPFVYVAVNENGDKVSAI 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05303 388 FunFam Serine/threonine-protein kinase PBS1 164 368 - -
Vivi4g05303 388 FunFam Serine/threonine-protein kinase BIK1 47 163 - -
Vivi4g05303 388 Gene3D Transferase(Phosphotransferase) domain 1 164 369 - -
Vivi4g05303 388 Pfam Protein tyrosine and serine/threonine kinase 84 359 IPR001245 GO:0004672|GO:0006468
Vivi4g05303 388 PANTHER OS01G0588500 PROTEIN-RELATED 51 363 - -
Vivi4g05303 388 SUPERFAMILY Protein kinase-like (PK-like) 57 360 IPR011009 -
Vivi4g05303 388 ProSiteProfiles Protein kinase domain profile. 81 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05303 388 Gene3D Phosphorylase Kinase; domain 1 42 163 - -
Vivi4g05303 388 CDD STKc_IRAK 87 362 - -
Vivi4g05303 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05303 Vivi-Chr4 186117747 186120125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05303 67 359 Glycoside Hydrolase AT3G07070 52.703 2.80e-100 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi4g05303 PK_Tyr_Ser-Thr 6.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05303 - - gmx:100802636 678.707