Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05296 ATGGCTAGTTCTAATCCTACTAATATCATCAATGCTACCAATGATCACAACACATCTTGTTCCAACAATAATCCTATTAGTACTAATAATAACAAGTTGTACAAAGGTGTGAGGAAGAGAAAATGGGGAAAATGGGTATCTGAAATTAGGCTTCCAAATAGCCGTGAGAGAATATGGTTAGGATCATATGACTCACAAGAGAAAGCTGCTAGAGCATTTGATGCAGCCCTTTATTGTCTACGTGGTCCTCAAGCTAGTTTCAACTTCCCTAATACCCCTCTTACCATCAATGTAGCTGCTCATAACTCTCTTACCCCACAAGAGATTCAAGAGATTGCAGCTAGGTTTGCCAATGAGTACACACCACCAATTGAGTTGAGTAGTACTCCTGAAGAAGAAGAAGATCAACAAGTGCCATTGTTAGAGTCACAAAATGATGCCAATTCTAATTCTTATTCATCTCCTTTTTATGATAATGAGGGTGATTTGAGGAGGATGGATTGGACATTTGAGGATATGCTGGATGACATGAATAATGGAGTTGCTAATGGCTCTCATTTTGGTTATTATGGGCTAGAAAAGATGCAATACTCGAGTGAGATACAATATTCCAATCAACTTTTTGTGGAGGACACTGTGGACCAAATTGAATATCTTCTTCAAAATATCCTTCCATATACGATTCAGGTTGCAGTAGATCTCACATTCCAACCGCAACCAAGTCGAATAATGGATTATGCAGTAAAGTCCCTAAAGGAACAAGGAGATATCGTTGGTGAAGGTAATGCGAGAAGAATCTCACCCGAAGAATCTACGAGAATTGAAATTAGAGATGCAAGCCAGTTACCCGCACCTCTTTAA 861 0.3902 MASSNPTNIINATNDHNTSCSNNNPISTNNNKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSQEKAARAFDAALYCLRGPQASFNFPNTPLTINVAAHNSLTPQEIQEIAARFANEYTPPIELSSTPEEEEDQQVPLLESQNDANSNSYSSPFYDNEGDLRRMDWTFEDMLDDMNNGVANGSHFGYYGLEKMQYSSEIQYSNQLFVEDTVDQIEYLLQNILPYTIQVAVDLTFQPQPSRIMDYAVKSLKEQGDIVGEGNARRISPEESTRIEIRDASQLPAPL 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05296 286 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Vivi4g05296 286 MobiDBLite consensus disorder prediction 140 156 - -
Vivi4g05296 286 MobiDBLite consensus disorder prediction 1 27 - -
Vivi4g05296 286 SUPERFAMILY DNA-binding domain 33 90 IPR016177 GO:0003677
Vivi4g05296 286 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Vivi4g05296 286 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 165 - -
Vivi4g05296 286 MobiDBLite consensus disorder prediction 121 156 - -
Vivi4g05296 286 CDD AP2 32 92 IPR001471 GO:0003700|GO:0006355
Vivi4g05296 286 Pfam AP2 domain 34 82 IPR001471 GO:0003700|GO:0006355
Vivi4g05296 286 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700|GO:0006355
Vivi4g05296 286 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Vivi4g05296 286 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Vivi4g05296 286 FunFam Ethylene-responsive transcription factor 2 32 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05296 Vivi-Chr4 185982385 185985407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05296 34 187 AP2-EREBP Transcription Factor Family AT1G74930 54.717 2.74e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi4g05296 AP2 4.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05296 - - vvo:131598518 568.155