Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05293 ATGGCTTCCGAAGATTCAGTTAAACAAGAATTGGAAGAATTGCAGAAACAATTGGGGAAGAAGCAGAAATTCGAAGCCGCTGTTTCATCTCTTAAATCTCTGCTCCAAACCACATATCCATCAGCTTCTACCTCTCTACGGAAATCTTTTTATACTGTTATATGCAGAGTTGCTACGGTGTTGAAGACGAGATACACAGCACCCGGTTTCTGGAGTGCTGGCTTAGGCCTTTTTGAGCAGGCTATATTGTTTGTTTCCGAACCTTCTGAGAAGGTGCACTTGAAGGCTTGCATTGATCAGGCCAAGGAACATTTGCATCTAGAAGACAACCCTTCACAAACTTTGCGACCTGCTGAGACTCGTGAAAATAGAGGATACCTTTTTGAGGGGCACCTTACGGTAGATCAAGAGCCACCACAGCCTGAATGGTTGGTTCAGGCAAACCTCTTGACAGCAGCTGCTACACTATTTGAAGCTGAATCCTCTCAAGGTTTAGCAACGAATGAAGCCACGACAGAAAATGTTGCTAGTGTGCTTGAAATGCTTAGAAATAGATTGGAAGAAGTTGTGCCGCTGATGGAGAATGATGGTCCTGTAGCTCCAAGAGTTCCTCCGGCAAGTAAAGCAGTTGTGGCGAAACTTCCCGTCATTACTCTCACAGAGGAGATCCTTGCTAATATGGGGAAAGATGCAGAGTGTGCCATTTGCAGGGAAAATCTGGCACTAAACGATCAAATGCAAGAGTTACCGTGCAAGCACACATTCCACCCTCCATGTCTAAAACCTTGGCTGGATGAGCACAATTCTTGTCCAATCTGTCGTCATGAGCTGCAAACTGATGATCATGCCTATGAGAGCTGGAAGGAACGTGAAAAGGAAGCTGAAGAGGAGAGGAAAGGCGCTGCAAACGCTCTTCGAGGTGGTGAATTCATGTATGTTTAG 942 0.4544 MASEDSVKQELEELQKQLGKKQKFEAAVSSLKSLLQTTYPSASTSLRKSFYTVICRVATVLKTRYTAPGFWSAGLGLFEQAILFVSEPSEKVHLKACIDQAKEHLHLEDNPSQTLRPAETRENRGYLFEGHLTVDQEPPQPEWLVQANLLTAAATLFEAESSQGLATNEATTENVASVLEMLRNRLEEVVPLMENDGPVAPRVPPASKAVVAKLPVITLTEEILANMGKDAECAICRENLALNDQMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAEEERKGAANALRGGEFMYV 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05293 313 Pfam Ring finger domain 232 274 IPR001841 -
Vivi4g05293 313 Coils Coil 284 304 - -
Vivi4g05293 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 280 IPR013083 -
Vivi4g05293 313 ProSiteProfiles Zinc finger RING-type profile. 233 274 IPR001841 -
Vivi4g05293 313 SUPERFAMILY RING/U-box 227 280 - -
Vivi4g05293 313 FunFam E3 ubiquitin-protein ligase RNF181 194 280 - -
Vivi4g05293 313 SMART ring_2 233 273 IPR001841 -
Vivi4g05293 313 CDD RING-H2_RNF126-like 232 274 - -
Vivi4g05293 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 125 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05293 Vivi-Chr4 185786373 185788410 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05293 7 313 C3H Transcription Factor Family AT5G20910 62.662 2.23e-127 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05293 K16274 - gmx:100798732 502.286