Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05289 ATGGATCAAGATGTGTTGGAAGAAGTAACAATCTTTGAAGAACCAGTTATAGCTGATTTTCAAAGACTCATGGAGCTTACAAACTATACAGATAAAGGGTCATCTCACTTAGCTCGTCTCATGAAACATTGGGAGTATAAGCAAGAAAATGCAGTTCGTCTTCTTCGAGAAGAGCTCGACAACCTTAGCAAACAAAGGGAGGAGGTTGAGCTTATAAAGGAGGAAAGTTACGGTGGAGACCAACGTGTGGTTTTGATATTGGATGATGATGTTCAAAACAAGAGAGTTGAAATTGAGGCTGAGTATGAAACTGTAGGTTACTGGAAACATCGGGCGATCGATTTGGAAAGACGGTTAGAGGCGAGTATTGGGAGAGAGGAGATATTAAAGGAAAAGTTGCAAGAAAATGTAGAGACTATTAAAAGAGAATCCTCACCTGTGGAGGGAGTCTCACAGATTCTTAAGAGAGAAGAAACTTTCCTACATTTTATACTTCAAAATGCACCTCTTGTTATTGGTCATCAGGATAAAGAGTTGCGCTATCGTTTTCTCTATAATCATTTTCCAAGTTTAAAAGAGGAGGACATCATCGGAAAAACGGGGGAAGAAATTTTTTCGGGTTCGGGTGTGAAGGAATCTGAAGATTTTAAGAGAGAAGTAATGGAGAAAGGATTTCCTGCAAAAAGGGAAATAACTTTTGAGACAAAACTATTTGGATCAAAGACATTTTTGATGTATGTAGAACCTGTGTTTAGCAAGGCAGGAGAAACAATTGGAGTAAACTATATTGGAATGCAAGTAACAGATCAGGTGTTAAAAAGAGAAAGAATGGCGAAGCTAAGGGAAGAGATTGTAGTTCAGAAAGCAATGGAAACAGAACTTAATAAAACCATTCACATCACAGAGGAGACAATGAGAGCAAAACAATTGCTGGCAACAATGTCTCTAGAGATAAGATCTCCAATTTCTAGTGTTGTTGACATGGCTAAAATTCTTACTACAACAAAACTTGATTGGGAGCAAAAACAGGTATTGGATGCAATGATATCTTCAGGAGATTTGGTTCTTCAACTAATTAATGATTTACTTGATCTTTCCAAGATTGATCTAGGTTAG 1116 0.3754 MDQDVLEEVTIFEEPVIADFQRLMELTNYTDKGSSHLARLMKHWEYKQENAVRLLREELDNLSKQREEVELIKEESYGGDQRVVLILDDDVQNKRVEIEAEYETVGYWKHRAIDLERRLEASIGREEILKEKLQENVETIKRESSPVEGVSQILKREETFLHFILQNAPLVIGHQDKELRYRFLYNHFPSLKEEDIIGKTGEEIFSGSGVKESEDFKREVMEKGFPAKREITFETKLFGSKTFLMYVEPVFSKAGETIGVNYIGMQVTDQVLKRERMAKLREEIVVQKAMETELNKTIHITEETMRAKQLLATMSLEIRSPISSVVDMAKILTTTKLDWEQKQVLDAMISSGDLVLQLINDLLDLSKIDLG 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05289 371 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 297 370 IPR036097 GO:0000155|GO:0007165
Vivi4g05289 371 Coils Coil 52 75 - -
Vivi4g05289 371 CDD HisKA 308 367 IPR003661 GO:0000155|GO:0007165
Vivi4g05289 371 SUPERFAMILY PYP-like sensor domain (PAS domain) 152 260 IPR035965 -
Vivi4g05289 371 Coils Coil 116 143 - -
Vivi4g05289 371 Gene3D - 272 369 - -
Vivi4g05289 371 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 116 369 - -
Vivi4g05289 371 FunFam Putative histidine kinase 5 294 371 - -
Vivi4g05289 371 FunFam Histidine kinase 5 148 283 - -
Vivi4g05289 371 Pfam His Kinase A (phospho-acceptor) domain 308 370 IPR003661 GO:0000155|GO:0007165
Vivi4g05289 371 Gene3D PAS domain 138 271 - -
Vivi4g05289 371 SMART HisKA_10 306 371 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05289 Vivi-Chr4 185738916 185741241 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05289 2 371 Histidine Kinase Gene Family AT5G10720 61.893 4.70e-158 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05289 - - cam:101512841 577.4