Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05288 ATGTGGCCAGAAGATGTTGAAAAACAGTTCAACATAGAAAAACCAGGAATGGATCAAGATGTGTTGGAAGAAGTAACAATCTTTGAAGAACCAGTTATAGCTGATTTTCAAAGACTCATGGAGCTTACAAACTATACAGATAAAGGGTCATCTCACTTAGCTCGTCTCATGAAACATTGGGAGTATAAGCAAGAAAATGCAGTTCGTCTTCTTCGAGAAGAGCTCGACAACCTTAGCAAACAAAGGGAGGAGGTTGAGCTTATAAAGGAGGAAAGTTACGGTGGAGACCAACGTGTGGTTTTGATATTGGATGATGATGTTCAAAACAAGAGAGTTGAAATTGAGGCTGAGTATGAAACTGTAGGTTACTGGAAACATCGGGCGATCGATTTGGAAAGACGGTTAGAGGCGAGTATTGGGAGAGAGGAGATATTAAAGGAAAAGTTGCAAGAAAATGTAGAGACTATTAAAAGAGAATCCTCACCTGTGGAGGGAGTCTCACAGATTCTTAAGAGAGAAGAAACTTTCCTACATTTTATACTTCAAAATGCACCTCTTGTTATTGGTCATCAGGATAAAGAGTTGCGCTATCGTTTTCTCTATAATCATTTTCCAAGTTTAAAAGAGGAGGACATCATCGGAAAAACGGGGGAAGAAATTTTTTCGGGTTCGGGTGTGAAGGAATCTGAAGATTTTAAGAGAGAAGTAATGGAGAAAGGATTTCCTGCAAAAAGGGAAATAACTTTTGAGACAAAACTATTTGGATCAAAGACATTTTTGATGTATGTAGAACCTGTGTTTAGCAAGGCAGGAGAAACAATTGGAGTAAACTATATTGGAATGCAAGTAACAGATCAGGTGTTAAAAAGAGAAAGAATGGCGAAGCTAAGGGAAGAGATTGTAGTTCAGAAAGCAATGGAAACAGAACTTAATAAAACCATTCACATCACAGAGGAGACAATGAGAGCAAAACAATTGCTGGCAACAATGTCTCTAGAGATAAGATCTCCAATTTCTAGTGTTGTTGACATGGCTAAAATTCTTACTACAACAAAACTTGATTGGGAGCAAAAACAGGTATTGGATGCAATGATATCTTCAGGAGATTTGGTTCTTCAACTAATTAATGATTTACTTGATCTTTCCAAGATTGATCTAGGTTAG 1164 0.3754 MWPEDVEKQFNIEKPGMDQDVLEEVTIFEEPVIADFQRLMELTNYTDKGSSHLARLMKHWEYKQENAVRLLREELDNLSKQREEVELIKEESYGGDQRVVLILDDDVQNKRVEIEAEYETVGYWKHRAIDLERRLEASIGREEILKEKLQENVETIKRESSPVEGVSQILKREETFLHFILQNAPLVIGHQDKELRYRFLYNHFPSLKEEDIIGKTGEEIFSGSGVKESEDFKREVMEKGFPAKREITFETKLFGSKTFLMYVEPVFSKAGETIGVNYIGMQVTDQVLKRERMAKLREEIVVQKAMETELNKTIHITEETMRAKQLLATMSLEIRSPISSVVDMAKILTTTKLDWEQKQVLDAMISSGDLVLQLINDLLDLSKIDLG 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05288 387 Gene3D - 288 385 - -
Vivi4g05288 387 SUPERFAMILY PYP-like sensor domain (PAS domain) 168 276 IPR035965 -
Vivi4g05288 387 Coils Coil 68 91 - -
Vivi4g05288 387 Gene3D PAS domain 156 287 - -
Vivi4g05288 387 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 131 385 - -
Vivi4g05288 387 FunFam Putative histidine kinase 5 310 387 - -
Vivi4g05288 387 Pfam His Kinase A (phospho-acceptor) domain 324 386 IPR003661 GO:0000155|GO:0007165
Vivi4g05288 387 SMART HisKA_10 322 387 IPR003661 GO:0000155|GO:0007165
Vivi4g05288 387 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 313 386 IPR036097 GO:0000155|GO:0007165
Vivi4g05288 387 Coils Coil 132 159 - -
Vivi4g05288 387 CDD HisKA 324 383 IPR003661 GO:0000155|GO:0007165
Vivi4g05288 387 FunFam Histidine kinase 5 164 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05288 Vivi-Chr4 185738916 185741270 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05288 1 387 Histidine Kinase Gene Family AT5G10720 61.893 6.23e-168 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05288 - - cam:101512841 602.823