Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05287 ATGGTTTGTGAGATGGAGAGTGATTGTATTGAAGACGACATGATGGAAATTGAAGTTTTACCATCAATGTGGCCAGAGGATGTTGGAACTGATGTTGGAAAACAGTTCAACATAGAAAAACCAGGAAGAGATCAAGATATGTTGGAAGAAGTAACAATCTTAGAAGAACCAGCTATAGCTGATTTTCAAAGATTAATGGAGCTTACAAATTATACAGAAAAAGGGTCATCTCAATTGGCTTATTTAATGAAACATTGGGAGTATAAGCAGGCGAATGCGGTTCGGCTTCTCCGAGAAGAGCTCGACAATCTTAGTAAACAAAGGAAGGAAGTTGAGCTTAGAAAATTGGAGATACTTAAAGATAATAATCGGTTCGAGGAAGAGAGTTACGGTGGAGATAAACGTCCGGTTTCGATATTGGATGATGTTTACTACACGTGGCAAGATCTACCGGTTGCGATAAGGAAAAGTGATGTTGTTGTTCAAAATAAGAGAATTGAAATTGAGGCTGAGTATGATACTGTTGTTTACTGGAAACATCGGTCGCAAGATTTGGAAAAACAGTTGGAGGCAAGTATTCGGAGAGAGGAAATATTAAAGGAGAAGTTACAAGAAAGTATAGAGACTATTGAAAGACAATCTTCACCTGTGGAGGAACTGTCACAGATTCTTAAAAGAGCAGATAATTTCTTACATTTTATACTTCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTGCGCTATCGTTTTATCTATAATCATTTTCCAAGCTTACAAGAGGAGGATATCATAGGAAAAACGGATGTCGAAATTTTCACGGGATCAGGTGTTAAGGAATCTCAAGATTTCAAAAGAGAAGTAATGGAGAAAGGAGTAGCTGCAAAAAAAGAAATCACTTTTGAGACAGAACTATTTGGAGCCAAGACATTTTTGATATATGTAGAACCTGTGTTTAGCAAAACAGGGGAAACAATTGGAGTAAACTATATGGGAATGGAAATAACAGATCAGGTGAGAAAAAGAGAAAGAATGGCTAAGCTAAGGGAAGAAATTGCAGTTCAGAAAGCTAAGGAAACAGAACTTAATAAAACCATTCACATTACAGAGGAGACTATGAGAGCAAAACAAATGTTGGCAACAATGTCTCATGAGATAAGATCACCACTTTCTGGTGTTGTTAGCATGGCTGAAATTCTCACTACAACAAAACTTGATAGGGAGCAAAGACAGCTCTTGGATGTCATGATATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAAGTCGAGTCAGGAGCTATGAAATTGGAAGCTACAAAATTCAGGCCAAGAGAGGTAGTAAGGCATGTTCTCCAGACAGCTGCAGCATCATTGCAGAAAATGTTAACATTGGAAGGGGATATAGCAGATGATATACCTATTGAGGTCACCGGAGATGTTTTAAGGATTCGGCAGATTCTCACAAATTTAGTCAGCAATGCTGTCAAGTTTACACATCAAGGCAAAGTTGGTATAAACCTTTATGTTGTTCCAGAGCCATCATTTGCCAAATCAGAAGAATGCCACCAAAAGGTGACAGAAGACCAATCAACTGTTTCTTCAAATGGATTGAAGGAAGAAAAACAGACATCATCACCAAGAAGTACTAGATGCGATCAAAATCTTATTGATGGTAAAAAACACACTGACCAACCAATCCAGAATCAAGCATTTAGCAACGAATGTAGTAGATCTTCGGCCAACAGTGAATGCTCAATGAATGATGATACTGAGGAGCAAACTCATTCAACTGAAACAACAGTGTGGATACGTTGCGATGTATTTGACACAGGAATTGGTATACCAGAAAAGGCTATACCTACTTTATTTAGAAGGTACATGCAAGTCAGTGCAGACCATGCTCGAAAATATGGAGGCACGGGTCTAGGATTAGCAATATGCAAACAACTGGTTGAGTTAATGGGTGGTCGCCTAACAGTAACTAGCAAAGAACATTGTGGTTCTACCTTCACATTCATACTACCATACAAGGTTTCAACAGCTTGTGATAATTCTGATGATCCAGATGACCTTTCAGATGTTGAGAATAATGAAGACGACACAACCGAGGGGTTCTTCCAATTCCAACCGCGAACATTAGGTTCGCTTTTCTCTTCTAATGGATCCACCAGGCCACACAGAATCTCACACAAGTTGAATGGTTTTCCAGATAACAACTCTTACTCAAACCTCTCTAGTAACATCAATTCAAATGGAACAAATTCAATTGAGGATGCATCTTCAGTTATTGTTAATGCTTCAGATATGTCTGAATCAACAAGTTCGTCAAGTCACTGCTCAGAAACAAAGCATGAATGTTTGGTTAATGGAAACAAACAGAATCATGATAATGATAAGGCACATGTTATGTTAGAAAACGGTACTGCGAACTCTAGTCAATATAAGGAAGCAGGTAGAGAAATGGACTTAGAAACAAAGTCAAGTGAACCACAGCAAACAACATGTCAAGGTCAAAGGAAGGAAGATAGTACTAGTAGCACCAGCACATCATCAGAAGTAACCAAATCGACGTTAAAGCCGAATATTCTTCTTGTTGAAGATAACAAAATTAATATCATGGTGACAAAGTCAATGATGAAGCAGCTAGGATATAGCATGGATGTTGTGAATAATGGTGTTGAAGCCATACGTGAGATTCAACGGCATTCTTATGACATAATTTTGATGGATGTTTACATGCCAGTTATGAATGGTCTTCAAACAACAAAACTGATTAGATCTTATGAGGAATCAGGCAATTGGGATGCTGCAAGAGAAGCTGGAATTGAACCAAGTTTATCGACTTCAGATGATCATTCTGTACCACCTAAAAAGCGGATCCACATTGTCGCGATGACAGCAAACACAATGTCAGAAAGTGCTGAAGAATGTTTCGCCAACGGTATGGACGCATTTGTGTCGAAACCAGTGACACTCCTAAAATTAAAAGAGTGTCTTGAAAAACATCTAAGGTGA 3042 0.383 MVCEMESDCIEDDMMEIEVLPSMWPEDVGTDVGKQFNIEKPGRDQDMLEEVTILEEPAIADFQRLMELTNYTEKGSSQLAYLMKHWEYKQANAVRLLREELDNLSKQRKEVELRKLEILKDNNRFEEESYGGDKRPVSILDDVYYTWQDLPVAIRKSDVVVQNKRIEIEAEYDTVVYWKHRSQDLEKQLEASIRREEILKEKLQESIETIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVKESQDFKREVMEKGVAAKKEITFETELFGAKTFLIYVEPVFSKTGETIGVNYMGMEITDQVRKRERMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILTTTKLDREQRQLLDVMISSGDLVLQLINDILDLSKVESGAMKLEATKFRPREVVRHVLQTAAASLQKMLTLEGDIADDIPIEVTGDVLRIRQILTNLVSNAVKFTHQGKVGINLYVVPEPSFAKSEECHQKVTEDQSTVSSNGLKEEKQTSSPRSTRCDQNLIDGKKHTDQPIQNQAFSNECSRSSANSECSMNDDTEEQTHSTETTVWIRCDVFDTGIGIPEKAIPTLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKEHCGSTFTFILPYKVSTACDNSDDPDDLSDVENNEDDTTEGFFQFQPRTLGSLFSSNGSTRPHRISHKLNGFPDNNSYSNLSSNINSNGTNSIEDASSVIVNASDMSESTSSSSHCSETKHECLVNGNKQNHDNDKAHVMLENGTANSSQYKEAGREMDLETKSSEPQQTTCQGQRKEDSTSSTSTSSEVTKSTLKPNILLVEDNKINIMVTKSMMKQLGYSMDVVNNGVEAIREIQRHSYDIILMDVYMPVMNGLQTTKLIRSYEESGNWDAAREAGIEPSLSTSDDHSVPPKKRIHIVAMTANTMSESAEECFANGMDAFVSKPVTLLKLKECLEKHLR 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05287 1013 MobiDBLite consensus disorder prediction 820 865 - -
Vivi4g05287 1013 CDD REC_hyHK_CKI1_RcsC-like 871 1008 - -
Vivi4g05287 1013 MobiDBLite consensus disorder prediction 569 596 - -
Vivi4g05287 1013 Pfam His Kinase A (phospho-acceptor) domain 378 441 IPR003661 GO:0000155|GO:0007165
Vivi4g05287 1013 FunFam Histidine kinase 5 863 1013 - -
Vivi4g05287 1013 CDD HATPase_EvgS-ArcB-TorS-like 492 684 - -
Vivi4g05287 1013 MobiDBLite consensus disorder prediction 536 561 - -
Vivi4g05287 1013 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 375 441 IPR036097 GO:0000155|GO:0007165
Vivi4g05287 1013 MobiDBLite consensus disorder prediction 836 865 - -
Vivi4g05287 1013 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 15 1012 - -
Vivi4g05287 1013 SUPERFAMILY CheY-like 869 1013 IPR011006 -
Vivi4g05287 1013 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 455 684 IPR036890 -
Vivi4g05287 1013 Pfam Response regulator receiver domain 871 938 IPR001789 GO:0000160
Vivi4g05287 1013 Gene3D - 364 441 - -
Vivi4g05287 1013 CDD HisKA 378 437 IPR003661 GO:0000155|GO:0007165
Vivi4g05287 1013 SMART REC_2 869 1008 IPR001789 GO:0000160
Vivi4g05287 1013 ProSiteProfiles Response regulatory domain profile. 870 1012 IPR001789 GO:0000160
Vivi4g05287 1013 Coils Coil 347 367 - -
Vivi4g05287 1013 Gene3D - 862 1013 - -
Vivi4g05287 1013 FunFam Putative histidine kinase 5 364 441 - -
Vivi4g05287 1013 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 487 685 IPR003594 -
Vivi4g05287 1013 FunFam Histidine kinase 5 218 353 - -
Vivi4g05287 1013 MobiDBLite consensus disorder prediction 529 604 - -
Vivi4g05287 1013 Coils Coil 94 128 - -
Vivi4g05287 1013 Gene3D - 442 691 IPR036890 -
Vivi4g05287 1013 Coils Coil 182 213 - -
Vivi4g05287 1013 PRINTS Bacterial sensor protein C-terminal signature 671 684 IPR004358 GO:0016310|GO:0016772
Vivi4g05287 1013 PRINTS Bacterial sensor protein C-terminal signature 612 626 IPR004358 GO:0016310|GO:0016772
Vivi4g05287 1013 PRINTS Bacterial sensor protein C-terminal signature 647 665 IPR004358 GO:0016310|GO:0016772
Vivi4g05287 1013 ProSiteProfiles Histidine kinase domain profile. 383 687 IPR005467 -
Vivi4g05287 1013 SMART HisKA_10 376 441 IPR003661 GO:0000155|GO:0007165
Vivi4g05287 1013 FunFam Probable histidine kinase 1 575 690 - -
Vivi4g05287 1013 SMART HKATPase_4 487 687 IPR003594 -
Vivi4g05287 1013 Gene3D PAS domain 217 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05287 Vivi-Chr4 185694809 185701310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05287 1 548 Histidine Kinase Gene Family AT5G10720 66.969 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi4g05287 HATPase_c 4.8e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05287 - - cam:101512841 1678.69