Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05286 ATGGGTGAAGTTGTAGAAGCAGTACCAAAGTCGGTGGTGGACGAGGCATGCTCAAATGCGAAGGTATCTGTGTGGTGGTTTTTAAATAACTGGGATGCTTACGATGAATCTAATGCTCTTGATATAAAAGACAATATCTATTCAGCACTAGCTGAGAAGAAATGCAACGGTCCCGTTTCCATCTTTTGCTTCGGGGACACAACTTTAATTCCTTATACTGTATGGCGTTCTCTCTACTGCACCGGAATTCCCATCAGCCATGTTCCTGCCGTTATGGAAGACACAATTTATCTGAAGATCGTTGTTGACATGATGCTCTGGGCAACTGCAAACCCTCCACCTGCAAATTACTTATTGATTTTGGGTGATGCCCCAATTTCTTTTGTCACCCAGCTTGTCGCCCCTCTTCTCCAAAAGAGGGGTTATAATATTTATGTTTCACCAACCCAAAATCTATCTGAACCACTCCTACTTGAACAACTTGCTCCCTCAGACACAGATTCTGAATTTCATGCTGGAAATTAA 525 0.4267 MGEVVEAVPKSVVDEACSNAKVSVWWFLNNWDAYDESNALDIKDNIYSALAEKKCNGPVSIFCFGDTTLIPYTVWRSLYCTGIPISHVPAVMEDTIYLKIVVDMMLWATANPPPANYLLILGDAPISFVTQLVAPLLQKRGYNIYVSPTQNLSEPLLLEQLAPSDTDSEFHAGN 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05286 174 Pfam NYN domain 21 156 IPR021139 GO:0004540
Vivi4g05286 174 CDD PIN_limkain_b1_N_like 21 147 - -
Vivi4g05286 174 PANTHER LIMKAIN B LKAP 17 158 IPR024768 GO:0005777|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05286 Vivi-Chr4 185395852 185397084 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05286 20 157 C2H2 Transcription Factor Family AT5G61190 41.304 1.01e-24 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05286 - - vvo:131596355 360.918