Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05285 ATGACGGATGAAGTGGTAGAAGCAGTTCCAAAGTCTGTGATGGACGATGTATACACCCGTGCGAAGGTATCTGTGTGGTGGGATTTAGAAAACTGGGATGTTTGCAAGGATCTTGATCCTTTTAAAATAAAAGATAATATCTGTTCAGCACTCGCTGAGATGAAATACCGTGGTGACGTTTCCATCTTTTGCTTCGGGGACACATCTATAATTCCTCAAGATTTTCAGAGTGCTCTCGGAATTCCCATCAACCATGTTCCTGCCGCAAACAAATCTGAGAAAGATTTGAGGATCGTTGCTGGCATGCTGGACTGGTCATTTGATAACCCTCCACCTGCAAATTACTTGTTGATTTCGGATAATGTCCAATTTACTTATGCCGTCATGCGACTCTTAGAGATGAGATATAATATTCTTCTTGCAATATCCCACCAAAATGCACCTGAACGATCCCTACTTGGCCCTGCTAAGATTGTATGGCTTTGCACTAGTCTCTTCGCCGGAGGATCTCCAATATATATAAGGGAGTCTCCAATATATACAAGGGAGTTCGCCGGAGGATCTCCAATATATATAAGGGGGATTTCCAACAAACTTGACACGGCAACTGGTTCTGATTCTGAGGATTCTGAGGTTCATGCTGGAAATTAA 651 0.427 MTDEVVEAVPKSVMDDVYTRAKVSVWWDLENWDVCKDLDPFKIKDNICSALAEMKYRGDVSIFCFGDTSIIPQDFQSALGIPINHVPAANKSEKDLRIVAGMLDWSFDNPPPANYLLISDNVQFTYAVMRLLEMRYNILLAISHQNAPERSLLGPAKIVWLCTSLFAGGSPIYIRESPIYTREFAGGSPIYIRGISNKLDTATGSDSEDSEVHAGN 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05285 216 PANTHER LIMKAIN B LKAP 19 188 IPR024768 GO:0005777|GO:0010468
Vivi4g05285 216 CDD PIN_limkain_b1_N_like 22 143 - -
Vivi4g05285 216 Pfam NYN domain 22 148 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05285 Vivi-Chr4 185385352 185386757 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05285 18 196 C2H2 Transcription Factor Family AT5G61190 42.703 1.31e-37 136