Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05283 ATGGATGAATTTAGTAACGCCATCACATCCCTTTGGTGGGATGCCGAAAACTGCAGACTTCCCCGTGACGCTAAAGCAAGCAATATAGTGCCTAATATTGCTTCAAATCTGGCTGCTATCGGCTTAACCGGGCCACTATCTATGTACATTTATGGCAACATTCGTCCACACGTTGATCATAATAACAATCGTAAAGGCTTTACGACGAAACAACATATGGATCTCTTCGCCTCCTCGTGTGTTTCTTTGCAACATGTTCCTGGGGATAATAATAGAGCAGATTCGGCTGATAAGAGAATGATACTAGACATGATGGATTGGGCATACCACCATTCTCCACCGGCCAATTATGTTATAATATCCGGAGACGGTGATTTTTCTTATGCGGTTCATAATCTTAGAATGATGAGATACAAGGTAGTTATTATTCAACCAAAGGTAGCTGCGAATACTTTAGTAGCGTCTACGCAGACGGTTTGGAAATGGAACGATTTTGTAGATAGAGTACCTAGGTCGGTGAATCCTATGAACCTGAAAACACCACCATCTCTCAATCGGACTTATGACATTAAAGGCATTGAATACACCACATCACCTATTTTTATCTGTTGGGATGTTGGAAGCTTCCCTGTTCCGGATAATCTAAATCCACAAGATGTATCACTTAACATTGACTTGGCACTTTCCAGAATCCAGTTAAAAGGTCGTCTATATTTCCACTGTTACGGTTGTTCTAATTCTACAACGTATGATCGTCGTCAAATTCTTTTGAATACAGGAATTGAACAACATGAAATTTCTAAAGATCTTAAAACCGCTGATAAGATAAGTTTTGCGAAGCTGCTTTTGTGGTCTTTGGACCACCACCCACCCGCAAGCTATGTAGTGATTTCAAATGATCTAGATTTGTGGATTGCACTCTCGAGATTAAAAGAAAAAGGCTATAATATTATGGCCGTTCAAGATCAACAACCTTGCCCGCTGCTGGTAAGCAAACTTGCTACAAAAATATGGGAGTGGTCTGTCCTCTGTAAGGGAGGAGTCCCTTTAACCAAGGAAGAAGTTGCAAGCCAACACCCAAAGCCAAAAACCCAAGTGTCCAAGAAACAAAATGTAGGAGATTCTTCTTTGTGGGTTGCAAGACAATAG 1149 0.4091 MDEFSNAITSLWWDAENCRLPRDAKASNIVPNIASNLAAIGLTGPLSMYIYGNIRPHVDHNNNRKGFTTKQHMDLFASSCVSLQHVPGDNNRADSADKRMILDMMDWAYHHSPPANYVIISGDGDFSYAVHNLRMMRYKVVIIQPKVAANTLVASTQTVWKWNDFVDRVPRSVNPMNLKTPPSLNRTYDIKGIEYTTSPIFICWDVGSFPVPDNLNPQDVSLNIDLALSRIQLKGRLYFHCYGCSNSTTYDRRQILLNTGIEQHEISKDLKTADKISFAKLLLWSLDHHPPASYVVISNDLDLWIALSRLKEKGYNIMAVQDQQPCPLLVSKLATKIWEWSVLCKGGVPLTKEEVASQHPKPKTQVSKKQNVGDSSLWVARQ 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05283 382 CDD PIN_limkain_b1_N_like 9 145 - -
Vivi4g05283 382 CDD PIN_limkain_b1_N_like 199 317 - -
Vivi4g05283 382 MobiDBLite consensus disorder prediction 356 375 - -
Vivi4g05283 382 Gene3D - 7 166 - -
Vivi4g05283 382 Pfam NYN domain 200 324 IPR021139 GO:0004540
Vivi4g05283 382 Pfam NYN domain 9 155 IPR021139 GO:0004540
Vivi4g05283 382 PANTHER LIMKAIN B LKAP 195 368 IPR024768 GO:0005777|GO:0010468
Vivi4g05283 382 MobiDBLite consensus disorder prediction 360 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05283 Vivi-Chr4 185334506 185337045 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05283 194 354 C2H2 Transcription Factor Family AT5G61190 31.481 1.60e-16 79.7