Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05277 ATGGAAAGTGGTAAGGATGGACATGATAGGGTGTTTTCACATCTTGCTCATGGTATAGCTGGTGCTGCACATGGTGGAGGTTATCCTCAGCAACAAGAGCTTGATCATTGGAACAATGGTGTCCACTTTTTCAAGGTTATCCTTGAAAGTACTCTCAAAGAAGAAAAACTGAGAGTTCCCATAAGTTTTGTGAGAAGATATTGGAAAGGAATAGAAAACCCAGTTACCCTAAGGCTACCAAATACGATTCAAAAGAAAGTTTTTTGGGAGAAAACTAGTGATTATGATGTTTTCTTTTGCAATGGTTGGAAAGAGTTTGCAAATTATTTGTCTTTAAGTGAGTCACAATTTTTGGTATTTCAATATCAAGAAAGCTCTCTATTTAATGTGATTGTAATTGATAAAAACGGATTAGAAATCAAATATCCAATAATAGAGATTAGTCAAGAATCTACTGAGATTGAATCAAGCAAAAGTTCTTTGCAAGTTAATGAAGATCCTTCACCAATACGCCGTCTTGGAAGACCAAAATCTTCTTCTAAAGTTTGTAAGAAAAAGAAAATCAATAGTCAAGAATCTATTGAGATTGAATCAAGCGAAAGTTCTTTGCAAGTTAATGAAGATCCTTCACCAGTGCGCCGTCTTGGAAGACCAAAATCTTCTTCAAAAGTTTGTAAGAAAAAGAAAATCAATCCAAAAGAACCAAAGAAATCATCAAAGCTTGAGAATAGAAAAGTTCAAATAGATGCAAGATTTCATAATCTTATGGATGTGGACAATGATTATTTGAAGGAGAAAAGTAGGGTTTTGTATGACAAAGTGAACAACATGTTTCGCTCTAACAAGGACTTCTTCGTATGCATGATCCAAAAGACATACATTGAAAGAAATATCGTGGGCATACCAACTGAATTTGGTAGGAGATTTTTGCATCAAATGGAAGGAAGAAATGTTACTCTTTTTATTAACAAACAGAAAACATGGATTGTTGATTTGAAGCTGACTTCAAATAATCAATATACATTAAGTGGTGGTTGGAGTAAGTTTCGTGCTTACAATGATGTCAAACTTGGTGATGTTTGTGTTTTTATACTAAACAAGAGCAAAGGAAAAATTTCATTTCAAGTTACTAATTTCTCTTTAGAAAAGGACACGAGTTCTCCTTATTTTGAAGGGAATACCAATATAGTTCCAGTTTAA 1200 0.3358 MESGKDGHDRVFSHLAHGIAGAAHGGGYPQQQELDHWNNGVHFFKVILESTLKEEKLRVPISFVRRYWKGIENPVTLRLPNTIQKKVFWEKTSDYDVFFCNGWKEFANYLSLSESQFLVFQYQESSLFNVIVIDKNGLEIKYPIIEISQESTEIESSKSSLQVNEDPSPIRRLGRPKSSSKVCKKKKINSQESIEIESSESSLQVNEDPSPVRRLGRPKSSSKVCKKKKINPKEPKKSSKLENRKVQIDARFHNLMDVDNDYLKEKSRVLYDKVNNMFRSNKDFFVCMIQKTYIERNIVGIPTEFGRRFLHQMEGRNVTLFINKQKTWIVDLKLTSNNQYTLSGGWSKFRAYNDVKLGDVCVFILNKSKGKISFQVTNFSLEKDTSSPYFEGNTNIVPV 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05277 399 MobiDBLite consensus disorder prediction 198 244 - -
Vivi4g05277 399 ProSiteProfiles B3 DNA-binding domain profile. 42 136 IPR003340 GO:0003677
Vivi4g05277 399 CDD B3_DNA 284 376 IPR003340 GO:0003677
Vivi4g05277 399 MobiDBLite consensus disorder prediction 219 234 - -
Vivi4g05277 399 Gene3D - 37 137 IPR015300 -
Vivi4g05277 399 MobiDBLite consensus disorder prediction 156 184 - -
Vivi4g05277 399 ProSiteProfiles B3 DNA-binding domain profile. 284 380 IPR003340 GO:0003677
Vivi4g05277 399 CDD B3_DNA 42 134 IPR003340 GO:0003677
Vivi4g05277 399 Pfam B3 DNA binding domain 284 375 IPR003340 GO:0003677
Vivi4g05277 399 PANTHER B3 DOMAIN-CONTAINING 41 232 - -
Vivi4g05277 399 Gene3D - 263 382 IPR015300 -
Vivi4g05277 399 SMART B3_2 43 136 IPR003340 GO:0003677
Vivi4g05277 399 SMART B3_2 284 380 IPR003340 GO:0003677
Vivi4g05277 399 SUPERFAMILY DNA-binding pseudobarrel domain 279 379 IPR015300 -
Vivi4g05277 399 SUPERFAMILY DNA-binding pseudobarrel domain 41 137 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05277 Vivi-Chr4 185180947 185183213 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05277 43 381 B3 DNA Binding Superfamily AT3G18990 25.352 2.60e-20 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi4g05277 B3 3.5e-11 CL0405