Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05275 ATGGAAAGTGGTAAGGATGGACATGATAGGGTGTTTTCACATCTTGCTCATGGTATAGCTGGTGCTGCACATGGTGGAGGTTATCCTCAGCAACAAGAGCTTGATCATTGGAACAATGGTGTCCACTTTTTCAAGGTTATCCTTGAAAGTACTCTCAAAGAAGAAAAACTGAGAGTTCCCATAAGTTTTGTGAGAAGATATTGGAAAGGAATAGAAAACCCAGTTACCCTAAGGCTACCAAATACGATTCAAAAGAAAGTTTTTTGGGAGAAAACTAGTGATTATGATGTTTTCTTTTGCAATGGTTGGAAAGAGTTTGCAAATTATTTGTCTTTAAGTGAGTCACAATTTTTGGTATTTCAATATCAAGAAAGCTCTCTATTTAATGTGATTGTAATTGATAAAAACGGATTAGAAATCAAATATCCAATAATAGAGATTAGTCAAGAATCTACTGAGATTGAATCAAGCAAAAGTTCTTTGCAAGTTAATGAAGATCCTTCACCAATACGCCGTCTTGGAAGACCAAAATCTTCTTCTAAAGTTTGTAAGAAAAAGAAAATCAATAGTCAAGAATCTATTGAGATTGAATCAAGCGAAAGTTCTTTGCAAGTTAATGAAGATCCTTCACCAGTGCGCCGTCTTGGAAGACCAAAATCTTCTTCAAAAGTTTGTAAGAAAAAGAAAATCAATCCAAAAGAACCAAAGAAATCATCAAAGCTTGAGAATAGAAAAGTTCAAATAGATGCAAGATTTCATAATCTTATGGATGTGGACAATGGAGATTATTTGAAGGAGAAAAGTAGGGTTTTGTATGACAAAGTGAACAACATGTTTCGCTCTAACAAGGACTTCTTCGTATGCATGATCCAAAAGACATACATTGAAAGAAATATCGTGGGCATACCAACTGAATTTGGTAGGAGATTTTTGCATCAAATGGAAGGAAGAAATGTTACTCTTTTTATTAACAAACAGAAAACATGGATTGTTGATTTGAAGCTGACTTCAAATAATCAATATACATTAAGTGGTGGTTGGAGTAAGTTTCGTGCTTACAATGATGTCAAACTTGGTGATGTTTGTGTTTTTATACTAAACAAGAGCAAAGGAAAAATTTCATTTCAAGTTACTAATTTCTCTTTAGAAAAGGACACGAGTTCTCCTTATTTTGAAGTGCAGGGAATACCAATATAG 1197 0.3383 MESGKDGHDRVFSHLAHGIAGAAHGGGYPQQQELDHWNNGVHFFKVILESTLKEEKLRVPISFVRRYWKGIENPVTLRLPNTIQKKVFWEKTSDYDVFFCNGWKEFANYLSLSESQFLVFQYQESSLFNVIVIDKNGLEIKYPIIEISQESTEIESSKSSLQVNEDPSPIRRLGRPKSSSKVCKKKKINSQESIEIESSESSLQVNEDPSPVRRLGRPKSSSKVCKKKKINPKEPKKSSKLENRKVQIDARFHNLMDVDNGDYLKEKSRVLYDKVNNMFRSNKDFFVCMIQKTYIERNIVGIPTEFGRRFLHQMEGRNVTLFINKQKTWIVDLKLTSNNQYTLSGGWSKFRAYNDVKLGDVCVFILNKSKGKISFQVTNFSLEKDTSSPYFEVQGIPI 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05275 398 Gene3D - 37 137 IPR015300 -
Vivi4g05275 398 MobiDBLite consensus disorder prediction 198 244 - -
Vivi4g05275 398 ProSiteProfiles B3 DNA-binding domain profile. 42 136 IPR003340 GO:0003677
Vivi4g05275 398 MobiDBLite consensus disorder prediction 219 234 - -
Vivi4g05275 398 MobiDBLite consensus disorder prediction 156 184 - -
Vivi4g05275 398 ProSiteProfiles B3 DNA-binding domain profile. 285 381 IPR003340 GO:0003677
Vivi4g05275 398 CDD B3_DNA 285 377 IPR003340 GO:0003677
Vivi4g05275 398 Gene3D - 264 383 IPR015300 -
Vivi4g05275 398 Pfam B3 DNA binding domain 285 376 IPR003340 GO:0003677
Vivi4g05275 398 CDD B3_DNA 42 134 IPR003340 GO:0003677
Vivi4g05275 398 SMART B3_2 43 136 IPR003340 GO:0003677
Vivi4g05275 398 SMART B3_2 285 381 IPR003340 GO:0003677
Vivi4g05275 398 SUPERFAMILY DNA-binding pseudobarrel domain 280 380 IPR015300 -
Vivi4g05275 398 SUPERFAMILY DNA-binding pseudobarrel domain 41 137 IPR015300 -
Vivi4g05275 398 PANTHER B3 DOMAIN-CONTAINING 41 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05275 Vivi-Chr4 185180947 185183213 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05275 43 382 B3 DNA Binding Superfamily AT3G18990 25.000 7.37e-20 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi4g05275 B3 3.5e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05275 - - vvo:131600529 715.687