Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05274 ATGGAAAGTGGTAAGGATGGACATGATAGGGTGTTTTCACATCTTGCTCATGGTATAGCTGGTGCTGCACATGGTGGAGGTTATCCTCAGCAACAAGAGCTTGATCATTGGAACAATGGTGTCCACTTTTTCAAGGTTATCCTTGAAAGTACTCTCAAAGAAGAAAAACTGAGAGTTCCCATAAGTTTTGTGAGAAGATATTGGAAAGGAATAGAAAACCCAGTTACCCTAAGGCTACCAAATACGATTCAAAAGAAAGTTTTTTGGGAGAAAACTAGTGATTATGATGTTTTCTTTTGCAATGGTTGGAAAGAGTTTGCAAATTATTTGTCTTTAAGTGAGTCACAATTTTTGGTATTTCAATATCAAGAAAGCTCTCTATTTAATGTGATTGTAATTGATAAAAACGGATTAGAAATCAAATATCCAATAATAGAGATTAGTCAAGAATCTACTGAGATTGAATCAAGCAAAAGTTCTTTGCAAGTTAATGAAGATCCTTCACCAATACGCCGTCTTGGAAGACCAAAATCTTCTTCTAAAGTTTGTAAGAAAAAGAAAATCAATAGTCAAGAATCTATTGAGATTGAATCAAGCGAAAGTTCTTTGCAAGTTAATGAAGATCCTTCACCAGTGCGCCGTCTTGGAAGACCAAAATCTTCTTCAAAAGTTTGTAAGAAAAAGAAAATCAATCCAAAAGAACCAAAGAAATCATCAAAGCTTGAGAATAGAAAAGTTCAAATAGATGCAAGATTTCATAATCTTATGGATGTGGACAATGGAGATTATTTGAAGGAGAAAAGTAGGGTTTTGTATGACAAAGTGAACAACATGTTTCGCTCTAACAAGGACTTCTTCGTATGCATGATCCAAAAGACATACATTGAAAGAAATATCGTGGGCATACCAACTGAATTTGGTAGGAGATTTTTGCATCAAATGGAAGGAAGAAATGTTACTCTTTTTATTAACAAACAGAAAACATGGATTGTTGATTTGAAGCTGACTTCAAATAATCAATATACATTAAGTGGTGGTTGGAGTAAGTTTCGTGCTTACAATGATGTCAAACTTGGTGATGTTTGTGTTTTTATACTAAACAAGAGCAAAGGAAAAATTTCATTTCAAGTTACTAATTTCTCTTTAGAAAAGGACACGAGTTCTCCTTATTTTGAAGGGAATACCAATATAGTTCCAGTTTAA 1203 0.3367 MESGKDGHDRVFSHLAHGIAGAAHGGGYPQQQELDHWNNGVHFFKVILESTLKEEKLRVPISFVRRYWKGIENPVTLRLPNTIQKKVFWEKTSDYDVFFCNGWKEFANYLSLSESQFLVFQYQESSLFNVIVIDKNGLEIKYPIIEISQESTEIESSKSSLQVNEDPSPIRRLGRPKSSSKVCKKKKINSQESIEIESSESSLQVNEDPSPVRRLGRPKSSSKVCKKKKINPKEPKKSSKLENRKVQIDARFHNLMDVDNGDYLKEKSRVLYDKVNNMFRSNKDFFVCMIQKTYIERNIVGIPTEFGRRFLHQMEGRNVTLFINKQKTWIVDLKLTSNNQYTLSGGWSKFRAYNDVKLGDVCVFILNKSKGKISFQVTNFSLEKDTSSPYFEGNTNIVPV 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05274 400 Pfam B3 DNA binding domain 285 376 IPR003340 GO:0003677
Vivi4g05274 400 MobiDBLite consensus disorder prediction 198 244 - -
Vivi4g05274 400 ProSiteProfiles B3 DNA-binding domain profile. 42 136 IPR003340 GO:0003677
Vivi4g05274 400 MobiDBLite consensus disorder prediction 219 234 - -
Vivi4g05274 400 PANTHER B3 DOMAIN-CONTAINING 280 384 - -
Vivi4g05274 400 MobiDBLite consensus disorder prediction 156 184 - -
Vivi4g05274 400 ProSiteProfiles B3 DNA-binding domain profile. 285 381 IPR003340 GO:0003677
Vivi4g05274 400 CDD B3_DNA 285 377 IPR003340 GO:0003677
Vivi4g05274 400 CDD B3_DNA 42 134 IPR003340 GO:0003677
Vivi4g05274 400 SMART B3_2 285 381 IPR003340 GO:0003677
Vivi4g05274 400 SMART B3_2 43 136 IPR003340 GO:0003677
Vivi4g05274 400 Gene3D - 37 137 IPR015300 -
Vivi4g05274 400 SUPERFAMILY DNA-binding pseudobarrel domain 280 380 IPR015300 -
Vivi4g05274 400 Gene3D - 264 383 IPR015300 -
Vivi4g05274 400 SUPERFAMILY DNA-binding pseudobarrel domain 41 137 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05274 Vivi-Chr4 185180888 185183213 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05274 43 382 B3 DNA Binding Superfamily AT3G18990 25.000 7.66e-20 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi4g05274 B3 3.5e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05274 - - vvo:131600529 731.865