Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05273 ATGGCTACTAAGCTCTGTGATTCCTGCAAGTCAACAAAGGCAACACTATTCTGCCGTTCTGACTCAGCTTTTCTTTGTATCACCTGTGACTCCAACATCCACGCCGCTAACAAACTCGCCTCCCGCCACCACCGTGTCACACTCTGCGAAGTCTGTGAACAAGCACCCGCTCACGTCACATGCAAAGCAGACGCCGCCGCTCTCTGCGTCTCCTGCGATCACGACATCCACTCCGCTAACCCCCTCGCCAGCCGCCACGAACGCATCCCGCTCAACACTTTCCACCACAACAGCCAGCAACAATTCTTCTCCGAATCCGATCCAGATGCTGACGTCAGCACCGAAGAAGCCGAAGCTGCTTCCTGGCTCCTCCAAACTCCCTCAAACCCTAAAGGCCCCGATCTCAACTCATCTCACTACTCATTCACCGAAATCGACGCTACCGACCTCAATTTCGTCTCCGTCGATGCTAAAACTGATTCGCCGGAGGAACATAGTCCCGGCACCGCAGACGGAGTCGTGCCGGTGCAGTCTCATAGCAAAACGGTCACCGAACACTACTCCGATATCAACAACGATTTCTCTACTTCTAAACCTTTTACTTACAACTATAATCACAGCGTATCGTCACCGTCGCTGGAGGTTGGAGTTGTACCAGACGGGAACGTGATGTCGGAGATATCATACTGCGGTTACGGAAGCACGCCGGCGGTGCAAATCACGGCGGCGGATAGAGAAGCTAGGGTTATGCGTTACAGAGAGAAGAGAAAGAATCGAAGGTTCGAGAAGACGATTCGTTACGCTTCGAGGAAAGCTTATGCAGAAACTAGACCTAGAATTAAAGGAAGGTTTGCGAAACGCTCTGATTTGAATATGAATGTGAATCTCATCGCCGAGGATGAGTGTTATGATGGATACGGCGTCGTTCCTTCCTGTTGA 939 0.5154 MATKLCDSCKSTKATLFCRSDSAFLCITCDSNIHAANKLASRHHRVTLCEVCEQAPAHVTCKADAAALCVSCDHDIHSANPLASRHERIPLNTFHHNSQQQFFSESDPDADVSTEEAEAASWLLQTPSNPKGPDLNSSHYSFTEIDATDLNFVSVDAKTDSPEEHSPGTADGVVPVQSHSKTVTEHYSDINNDFSTSKPFTYNYNHSVSSPSLEVGVVPDGNVMSEISYCGYGSTPAVQITAADREARVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRSDLNMNVNLIAEDECYDGYGVVPSC 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05273 312 ProSiteProfiles CCT domain profile. 245 287 IPR010402 GO:0005515
Vivi4g05273 312 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Vivi4g05273 312 CDD Bbox1_BBX-like 5 48 - -
Vivi4g05273 312 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Vivi4g05273 312 Pfam B-box zinc finger 4 46 IPR000315 GO:0008270
Vivi4g05273 312 SMART bboxneu5 49 91 IPR000315 GO:0008270
Vivi4g05273 312 SMART bboxneu5 1 48 IPR000315 GO:0008270
Vivi4g05273 312 CDD Bbox1_BBX-like 48 91 - -
Vivi4g05273 312 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Vivi4g05273 312 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 292 IPR045281 GO:0009909
Vivi4g05273 312 Pfam CCT motif 245 287 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05273 Vivi-Chr4 185158640 185160017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05273 1 311 C2C2-CO-like Transcription Factor Family AT5G24930 51.639 2.95e-101 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vivi4g05273 zf-B_box 3.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05273 - - psat:127091607 625.55