Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05232 ATGGCATCAATATATTTTTACAAGGATGTTCTTCCATTCATTGCAATGGTTGCAATAGAGTTCACAAACGTTGGTGTATCTGTTCTATTCAAAGCAGCTACTCAGAATGGATTGAGTTTCTATGTCTTCATTGCTTACTCATATCTTGTCTCCACTTTTGTTCTTCTTTTTCTTCAACCCTTCTTCCTCAAATGGTCAACAGGGCTTCCTCCTTTGAACAAGTCTCTAATCCTCAGAATTTTTCTCCTTGGAGTTTTAGGAGTTGTGGCTCAGCTATTTGGCTACAAAGGACTAGAATACACTACACCTACTCTTGCTTCTGCTCTTGCCAACCTTATACCTGCTTTTACATTCATCCTAGCTATCTTTTTCAGGATGGAGTATATAAATTTAAGAAGCAAAAGCAGTCAAGCCAAAATATTGGGTTCGAGCATATCGATTTTAGGCGCACTCGTAGTTGTACTTTATAAAGGTCCGATAATTATACATTCGCCATCGACAAAACCACTACATACTATTGATTCTCCAATAAGTATAACAGCAGAACCAAATTGGATTCTCGGTGGATCTCTACTTCTTATAGAGTTTCTCATTATTCCAATCTGGTACATTATTCAGACCAATGTCATAAAAGAATATCCATCCGAAGTTATTGTCGTCTTTTATTACAACCTATGCGGAGCAATAGTGTCTGTGCCACTATGCTTACTACTAGAACCAAACTTGAGTGCATGGAAAATAAATCCCGATATCGAGTTGATCTCCATTTTAGTCTCGGGAATTTTTTGCACTGGATTAAGTTGTCTTGTTCATACTTGGGGACTCCATGTTAAAGGCCCTTTGTACATATCAATGTTTAAGCCATTGTCAATAGCTATTGCTGCATGTATGAGTGCTATATTCCTTGGTGATGCACTGTATTTTGGAACTGTTGTTGGAGCAGTAGTAATATCAGTTGGATTTTATGCTGTTTTGTGGGGAAAATCCAAAGAAGAATTGATTGGTGATTTTGACACAAGTACAGTTCCACTTTCATACAATGCTAAGACTCCTTTGTTGAAAAGCTAA 1068 0.3736 MASIYFYKDVLPFIAMVAIEFTNVGVSVLFKAATQNGLSFYVFIAYSYLVSTFVLLFLQPFFLKWSTGLPPLNKSLILRIFLLGVLGVVAQLFGYKGLEYTTPTLASALANLIPAFTFILAIFFRMEYINLRSKSSQAKILGSSISILGALVVVLYKGPIIIHSPSTKPLHTIDSPISITAEPNWILGGSLLLIEFLIIPIWYIIQTNVIKEYPSEVIVVFYYNLCGAIVSVPLCLLLEPNLSAWKINPDIELISILVSGIFCTGLSCLVHTWGLHVKGPLYISMFKPLSIAIAACMSAIFLGDALYFGTVVGAVVISVGFYAVLWGKSKEELIGDFDTSTVPLSYNAKTPLLKS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05232 355 Pfam EamA-like transporter family 191 325 IPR000620 GO:0016020
Vivi4g05232 355 Pfam EamA-like transporter family 25 154 IPR000620 GO:0016020
Vivi4g05232 355 SUPERFAMILY Multidrug resistance efflux transporter EmrE 223 330 - -
Vivi4g05232 355 PANTHER WAT1-RELATED PROTEIN 11 339 IPR030184 GO:0016020|GO:0022857
Vivi4g05232 355 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05232 Vivi-Chr4 184469281 184471420 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05232 5 334 Nodulin-like Gene Family AT5G40240 53.916 7.54e-124 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05232 - - gmx:100805667 484.952