Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05222 ATGGATGAAAAGGTGGAAACTCTTGAATTGGAGTTGCAACAAGTGAGAGAGGAGAACAATAATCTAAGATTCATGCTTGAAGTTATGAGTATTAAGTGCACAAATTTAGAATCACATCTTCAAGAGATTAACAAAGAAGGACACAAAGAGATCATAAACTCAAATCAAATAGGGTTATTACCTAACTTTGATACAAGCAAAAGAGCAAGAGTAGAGTACTTTCCAACAGCCAAAAAACCAAAACAAGTATTTGTTAAAACTCATCCTAATGATGAAAGTTTGATAATAAAAGATGGCTATCAATGGAGAAAGTATGGACAAAAAGTTACCAAAGATAATGCTTCTCCTAGAGCTTACTTTAGGTGCTCCATGGCCCCTAGTTGTCCAGCCAAAAAGAAGGTGCAAAAATGCTTACATGATAAGTCTATCATTGTGGCAACATATGATGGAGAACACAACCATGGTGTCTCTAATGAGCCATTCAAACCATCTTCATCCACCCTAAATGACAGAGAAGCCATAAACACTAGACTTTGTGAGGATGTCATGCAACAATTTGGCTATGGAAACAAAGTGAAATTTGAAGAATATGCGAGTTCGCTAATCCTAGATCCTGACTTCACTGCAGTATTAGCTAAAGCTGTTGCTAAAACTATTGTGGATCAACAGCATAAGCGACAAGGTCTAAATCTCAATTTGAATCTTTCACAAGAGTGA 717 0.364 MDEKVETLELELQQVREENNNLRFMLEVMSIKCTNLESHLQEINKEGHKEIINSNQIGLLPNFDTSKRARVEYFPTAKKPKQVFVKTHPNDESLIIKDGYQWRKYGQKVTKDNASPRAYFRCSMAPSCPAKKKVQKCLHDKSIIVATYDGEHNHGVSNEPFKPSSSTLNDREAINTRLCEDVMQQFGYGNKVKFEEYASSLILDPDFTAVLAKAVAKTIVDQQHKRQGLNLNLNLSQE 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05222 238 Coils Coil 5 46 - -
Vivi4g05222 238 Pfam WRKY DNA -binding domain 97 154 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi4g05222 238 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 5 156 IPR044810 GO:0003700
Vivi4g05222 238 ProSiteProfiles WRKY domain profile. 91 157 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi4g05222 238 SUPERFAMILY WRKY DNA-binding domain 92 156 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi4g05222 238 Gene3D WRKY domain 81 157 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi4g05222 238 SMART WRKY_cls 96 156 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05222 Vivi-Chr4 184312134 184313617 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05222 78 224 WRKY Transcription Factor Family AT1G80840 42.197 8.65e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi4g05222 WRKY 1.9e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05222 - - mtr:11435998 382.489