Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05219 ATGGACTCAACATGCATCGATACTTCACTCAATCTTAACAACATCAATCTTCCTTCCACATACAAGGACGAAGTTTTGGTTGAAGAGTTACGTCGTTTGAGTTGCGAGAACAAAAGACTAAACGAAATATTGACAAACATGTGTGAGGGTTATGAAGCTATGCAAAATCAATTGAGACAATTGATGATGAAACAAAATATTGAAAACCAAACACAAGACTCTAGGAAGAGAAAATTTGAGAATGAAAGTTGCATGAATATGTTTGGAGGTGTTAGAGAGTGTAGCAATGTTAGTGATGAAGAATCAATGATGAAAAGGCCTTGTAGGGATGTTTCATCATCTAAGGCTTATAAGGTTCTTGTGAAGACAGAAGCATCTAGTAATAGCTTGTATGTGATGGATGGATATCAATGGAGGAAATATGGTCAAAAGGTTACTAGAGATAATCCTTCTCCTAGAGCTTATTTTAGATGCTCCAAAGCTCCAAATTGCCCGGTTAAAAAGAAGGTGCAAAAAAGTTTAGAAGACCCTACTATACTAGTTGCAACATATGAAGGAGAGCACAACCATGGTAATGAAAAAGCTGAAATGTCAATGATATCAAGCCAATGTGAAGAAGCCCGTTTAGGTCCAGTTCATGTTTCTTCACCTAAACAAATTATGGAAATGACTTCTCCAACCATGAGGCTTAACTTGGTTGACAGTGTTCCAAACTCATCTATCCAACAACATTTGGTTCAACAAATGGCCACTTCTTTGACAAATGATCCCAATTTTACTACAGCACTTGCTAATGCTATTTCAGGAAGAATTTTGGACAATGCTTGTAATGAAGCTAAATTTTGA 846 0.3652 MDSTCIDTSLNLNNINLPSTYKDEVLVEELRRLSCENKRLNEILTNMCEGYEAMQNQLRQLMMKQNIENQTQDSRKRKFENESCMNMFGGVRECSNVSDEESMMKRPCRDVSSSKAYKVLVKTEASSNSLYVMDGYQWRKYGQKVTRDNPSPRAYFRCSKAPNCPVKKKVQKSLEDPTILVATYEGEHNHGNEKAEMSMISSQCEEARLGPVHVSSPKQIMEMTSPTMRLNLVDSVPNSSIQQHLVQQMATSLTNDPNFTTALANAISGRILDNACNEAKF 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05219 281 SUPERFAMILY WRKY DNA-binding domain 129 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi4g05219 281 ProSiteProfiles WRKY domain profile. 127 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi4g05219 281 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 24 271 IPR044810 GO:0003700
Vivi4g05219 281 SMART WRKY_cls 132 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi4g05219 281 Pfam WRKY DNA -binding domain 134 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi4g05219 281 Gene3D WRKY domain 115 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05219 Vivi-Chr4 184299149 184301374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05219 3 271 WRKY Transcription Factor Family AT1G80840 42.568 1.64e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi4g05219 WRKY 1.5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05219 - - gmx:100810978 301.982