Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05217 ATGCCGTTCGGTGTTACTAACGCGCCGGGAGTAATCATGGAGTATATGAACCGTATCTTCCGAGAATATTTGGATCAGTTTGTCGTAGTGTTCATAGACGACATCTTGATATATTCTAAGTCAGAAGAAGAGCATGTGGATCATTTGAGGACGGTGTTGCAAGTGCTGAAAGGAAGAAAGTTGTATGCAAAGCTGTCCAAGTGCGAATTCTGGTTGAAAGAAGTCAGTTTTCTTGGTCATGTCATATCTGGTAGTGGCATTGTTGTAGATCCATCTAAGGTAGATGCTGTGTTGCAATGGGAATCTCCAAAGTCAGCTACTGAGATTAGAAGTTTCTTGGGTTTAGCCGGTTACTACAGACGGTTTATCGAAGGGTTCTCTAAGTTGGCACTTCCGTTGACCAAGTTAACTTGTAAAGGTAGAGCTTTTGTGTGGGATACACAATGCGAAGAGAGCTTTGTAGAATTGAAGAAGAGATTGACGACGACTCCGGTTTTGACGTTACCTAATCTGGGAGAACCTTTTGTAGTATATTGTGATGCTTCTCTCATGGGTTTAGGTGGTGTGCTTATGCAGAATGATAAGGTTATTGCTTATGCGTCGAGGCAGTTGAGAATTCATGAAAAGAACTACCCTACGCATGATTTGGAGCTTGCTGCAGTTGTTTTTGTGCTAAAAATTTGGAGACATCATCTTTATGGTTCTAGATTTGAATTCCGAGATATGAGTTTAGTTTGTGAAGTGACACCGCAAAGTATTAAGTTGGGAATGCTTAAGGTTAATAATGATTTTCTGGATAATATCAAGGAGGCTCAGAAGTTGGATGTGAAGCTAGTGGACATCATGGCTGGTTGTGGCCAATCAGAGAAAAGTGACTTTAAGATAGATATGCATGGTGTGTTAAGACTGCAAGATCGAATTTGTATTCCTGAGGATGATGATATGAGGAGGATGATTCTAGAAGAAGGTCACAGGAGTAACTTGAGTATCCATCCTGGAGCTACTAAAATGACTCCGTTATGTTGGCATGAATTTGGAGAAAGTGTAGTACTTGGACCGGAGATTGTTCGAGAAACTACTGAGAAAGTGAAGTTAATTCGAGAAAAGATGAAGGCTTCTCAGAGTAGACAGAAGAGCTATCATTACAAGAGAAGGAAGGATTTGGAATTTCAAGCTGGTGACCATGTGTTTTTGAGAGTCACACCCGTGACTGGTGTGGGGCGAGCCTTGAAGTCTAAGAAGCTCACTCCTCGTTTTATCGGTCCCTATCAGATTCTAGACAGAGTGGGAAAAGTTGCTTACCGAGTGGCGTTGCCGCCAACTCTTTCTAATTTGCACGATGTGTTTCATGTGTCACAACTCCGAAAGTACATTCCAGATCCGTCTCATGTAGTACAGATGGATGACGTACAAGTGCGAGATAATCTCACTGTGGAAACTAAGCCTGTAAGGATCGCGGATCGGGAAATGAAGACTCTGAGAGGAAGAGAGATTTCATTGGTGAAAGTTGTTTGGTTGGGAGCAGCTGGGGAAAGCATAACATGGGAATTGGAGAGCAAGATGCGAGACTCCTACCCCGAGTTGTTTGAATCAGGTTGTAACATTGGTGCTTTCATCATGGACCACAATGATTTCATGAACGCCCTTCAATCCAAATTTGATGCTCAATCCGAAGCGATTCGTTCCATGATTCAAACATCGCTGGATTCTCATTCTGATTCCGTGCACTCAACGCTGCATCGTCACCTGCTTGAGGTGGATTCCAAGGTGGTCGTACTTCGTGCGAAGGTGTCATCAACTACCGCCGCCAATTCTGGGTCGGTTTCACGGACGTTGAAGCTCAGTGTTCCACGTTTTGATGGTTCTAACCCGCTGGATTGGTTATTCCAAATCGAAGCATTTTTTGACTTTCATAACACTCCGGCAGCGTCTCGTCTCCAGATTGTAGCATTTCATCTGGAAGGTCGCGCAGATGCGTGGTTTCAGTTGGCAATGCGTAATGATTTGCTTCCTTCATGGCCAACGTTCTTGGAAGCGGTCCGTCATCGTTTTGGTCCTACTACGTATGAAGATGTTGAAGGAGATTTATCCAAGTTAGCACAGACAGGTTCAGTAGCAGACTTCCAAGCACAATTTGAAGATTTGATGAACAAAGTCATTGGTATCTCTGAGCCTCTACTCATTAGTTTTTTTATTACCGGCCTCAAACAAAACTTGCGTCGTGAATTACAATTTCATCGACCTCCAACATTAATGGAAACCTTTGCCATGGCCAGAGCTTACGAGGCTCGCCTTGATGACAATCCCCCGACGTCGAAAAATTGGTCTCGTAGCCCACATACAACCGCATCCCTAAACACTTCAAACTCACAACGTAACACAACCCACTCAACCCCAGCCCAAATACTTAACCCCAAACCACCCCACATCACCACCAGCGGCTTGAAACCTAGTAACTTACCTCCTTTACTTCCCACACCGAACACCACTACACCGGTTCGTAACCTGCCGGCTGCCGAACTTCTTGACCGTCGCTCCAAGGGTCTGTGTTTTAAATGTGATGAGAAGTGGAATCCATCTCATCGTTGTCATAGTCGTGTACTTTTGTTATTGGGGGATGATGATGAGCCACCACCTGAATCTGTCAACACCTCAGAAGACATTTCTGGTGACATCTCTAGTATCCATGCTCTGTCTAGTCAGATTCAAGGTCGTTCCCTGCGTATTTTGGGTTCATACAACCATATCAGTTTTCCTATTCTCATAGATAGTGGAAGTACACATAATTTTATCAAACCAACATTGGTGGAACAATTAGGGTTGGCAGTGACTCCTTGCCCACGATTTCGCGTTGCTACAGGTTGTGGTACATTTTTGGTGTGTCAATTTTGTTGCAAAAATGCTCCACTCCTGGTCCAAGGCATTAGTTTTGTTGTGGATCTCTTTGTTTTGGCAATTGAAGGCCCTGATGTTGTTTTGGGATTCCCATGGTTGCAATCTTTGGGCAAAGTCTCTCATGACTACTCAGCACTTACCATGGAGTTTATGTGGCAGGGGAAACAGGTTCAACTTGTCGGTGACAAAACCTTAGCTTCTCAATCAGTTTCTTTCCATCAGTTGCAAGCTATGATGCAAAAGGCTGACATTGCAGAGCTCTTTGCAATTACACAGACCTCATCTATGCCTTGTCCGGAATTAGATTCAACATTTCCGGGCGACTTACCAGCCCTGTTTACAGTGTTACTTGAACGCTTTGCTGCTATATTCGCCCAACCTATAGGCCTACCTCCACATCGCTCAGTTGACCACCGCATTCACTTAATTGAAGGGTCAAAACCTGTCAACGTTCGACCATATCGATATCCACAATTCCAAAAGGCTGAAATGGAAAAACTAATCAAAGAAATGCTTGCTCAAGGAATTATTATCCCAAGCCATAGTCCTTTTTCTTCCCCGGTGTTGTTGGTTCGTAAGAAAGACGGAACTTGGCGTTTTTGTGTGGATTATAGAGCTTTGAATGCAGCTACAATTAAGGATAAATTTCCGATTCCCACAATCGACGAACTCTTGGATGAACTCGGCGGTGCTATAGTGTTCACAAAATTGGATTTGCGTGCGGGGTACCACCAGATTCGTTTGCACAACCGGGACACGTATAAGACGGCTTTCCGCACACATGATGGACACTTTGAGTTTTTAGTGATGCCGTTTGGCCTTACAAACGCTCCGTCAACATTTCAAGCCACCATGAATCAGTTGTTTTCCCAATTTCTACGGCGGTTTGTCATTGTATTTTTTGATGATATTCTAATATATAGTTCCTCCCTTGATGACCATTTACAACACTTGGAATTGGTTCTTACTTGTTTACAACATAATTGTTTTTATGTCAAACTGTCCAAGTGTTTGTTTTGTCAAGAATCAATTGAGTATTTGGGTCACATAGTTTCCTCCAAAGGTTATTATCGTCGCTTTATTGCGCATTATGCCACCATTGCTGCCCCGTTGACTGATCTATTGCGCCATGATTCTTTTTGTTGGTCTGAGGAGGCTACCACGACTTTCATAGCCCTCAAGCATGCAATGATGGCTGCCCCGGTCCTTAGCCTTCCTGATTTTTCTAAGGAGTTCATCATTGAAACGGATGCATCAAATGTGGGCATTGGTGCGGTTCTTATGCAAGACGGTCATCCACTTGCATTTTTTAGCAAGAAATTGGGCCCTAAGCTACAAGCTGCTTCTGTTTATATTAAAGAGCTTCATGCTATCACCGAGGCGGTTCTCAAATGGCGTCAATACCTCTTGGGACATTTTTTCATTATTAGGACAGACCATAAAAGCATTAAAGAACTATTGCAACAGGTTATTCAAACACCAGATCAACAAGCTTATGTGCGGAAATTGTTGGGTTTTCAGTTTTGCATTGAGTACAAACCAGGAGCATCAAATAAAGTAGCTGATGCGTTATCGCGTGTCCCTATGGACTGGCCTATAGAGGAGGACATAGAAACTCAATCGGAATTGTGGGCCTTGGTATCTTCTCCAACTTTTGGTATTGTGTCTCAATTACGAAAAGAAAATGCATCTGATCCTGTTTTACTTGAGTTTCACAATCAACACCGACAGGGTACTTTGGTAGCTCCCTATACAATTGTTAATGGGTTGCTTCTACATACTGGCCGATATGTTTTAAATCCACACTCTCCATTATGTAATTTGGTTATTAGTGAGTTTCATGATACACCAAGTGGAGGTCATGCTGGTGTAAAGCAAACACTTGCACGGATTGCAGTGAATTTTTTCTGGATAGGTATGCGTAAGGCAGTGGAGTCTTTTGTGGCTGCTTGTCTTATTTGTCAGCAAATTAAATCACCCACTCAAGTTCCAGCTGGGTTACTCCAACCTCTCCCTATTCCAGAAGCCGTTTGGGAAGATGTAACGATGGATTTCATTACGGCCCTTCCTCCGTCTAATGGATTCACTGTCATCTTAGTTGTTGTAGATCACCTATCTAAGTCTGCTCATTTTGGTTCTCTTTCCAGAACCTTTACAGCCTCCAAGGTTGCTGAACTGTTTATTTCATTAGTTGTCTGTCACCATGGTTTTCCCCGTTCTATTGTGTCTGATCGCGACCCTGTGTTCATTAGCAATTTTTGGCGCAAGTTATTTGAATTGAGTGGTACCAAATTAGCTATGAGTAGTGCTTACCACCCTCAAACGGATGGTCAATCGGAGGTGGTTAATCGTGGAGTAGAACAGTACCTTCGTGCCTTTACTCAAGACAAACCTTCTTCTTGGGTTTTGTATCTTCCCTGGGCAGAATTTCACTATAACACTAGCTTTCATAGTGGATTACAAATGTCTCCGTTTGAAGCTCTTTATGGTCGCAAGCCTCCCACTATTCCAGCATACACACGTGGAGCCACATCTATTTCAGCTCTAGATGATAATTTTACCACTCGTGATGAACTCTTGCGCAACCTCAAAGCTAATTTGCTGACAGCTCAAAACCGCATGACTCAACAAGCCAATTCCCATCGTCGTGATTTCACATTTGCTGTCGGTGATAATGTGCTAGTTCGTCTGCGCCCGTACCGACAACTTTCTGTCCGTCTTCATCGCCAGCATAAGCTTTCCAAGAAGTTTTATGGCCCTTATAAGATACTCGAGCGCATTGGTCCGGTAGCGTACAAGCTCCAATTACCTTCGGGGAGTCGCATACATCCAGTGTTCCACGTCTCGACTCTTAAACCTTTTCGAGGTCAAGAGAACCCTCCACATCAGGATTTGCCTCCCGAGAGCTTTGATAATCAACCAGTTGAACGACCTGGTACGATTCTGGCCTATCGTACTGTTTTGGTTCAGGGTCAGCTTCGGCCTCAATTGCTGGTGCAATGGATCGACTCCCCGGCTGATGAAGCTTCGTGGGAAGATATGGCTTCTTTTCAAGATTGTTATCCGGACTTCCACCTTGAGGACAAGGTGAATTTTGATGGGGAGAGAAATGATACGAGCCCATTAGTGGAAGGCCCAAGAGCATTAGTGGAAGGCCCAATACCATATTGTATATGTTTTGTATCAGGAATATACAGTGACGGTAGCAACTGTGCAAATTGTTTCAACAATGTTGATAATGAAGCTGCTAGACGAGAGGCTGTTGAAGCTACTTTATAG 6174 0.4357 MPFGVTNAPGVIMEYMNRIFREYLDQFVVVFIDDILIYSKSEEEHVDHLRTVLQVLKGRKLYAKLSKCEFWLKEVSFLGHVISGSGIVVDPSKVDAVLQWESPKSATEIRSFLGLAGYYRRFIEGFSKLALPLTKLTCKGRAFVWDTQCEESFVELKKRLTTTPVLTLPNLGEPFVVYCDASLMGLGGVLMQNDKVIAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHHLYGSRFEFRDMSLVCEVTPQSIKLGMLKVNNDFLDNIKEAQKLDVKLVDIMAGCGQSEKSDFKIDMHGVLRLQDRICIPEDDDMRRMILEEGHRSNLSIHPGATKMTPLCWHEFGESVVLGPEIVRETTEKVKLIREKMKASQSRQKSYHYKRRKDLEFQAGDHVFLRVTPVTGVGRALKSKKLTPRFIGPYQILDRVGKVAYRVALPPTLSNLHDVFHVSQLRKYIPDPSHVVQMDDVQVRDNLTVETKPVRIADREMKTLRGREISLVKVVWLGAAGESITWELESKMRDSYPELFESGCNIGAFIMDHNDFMNALQSKFDAQSEAIRSMIQTSLDSHSDSVHSTLHRHLLEVDSKVVVLRAKVSSTTAANSGSVSRTLKLSVPRFDGSNPLDWLFQIEAFFDFHNTPAASRLQIVAFHLEGRADAWFQLAMRNDLLPSWPTFLEAVRHRFGPTTYEDVEGDLSKLAQTGSVADFQAQFEDLMNKVIGISEPLLISFFITGLKQNLRRELQFHRPPTLMETFAMARAYEARLDDNPPTSKNWSRSPHTTASLNTSNSQRNTTHSTPAQILNPKPPHITTSGLKPSNLPPLLPTPNTTTPVRNLPAAELLDRRSKGLCFKCDEKWNPSHRCHSRVLLLLGDDDEPPPESVNTSEDISGDISSIHALSSQIQGRSLRILGSYNHISFPILIDSGSTHNFIKPTLVEQLGLAVTPCPRFRVATGCGTFLVCQFCCKNAPLLVQGISFVVDLFVLAIEGPDVVLGFPWLQSLGKVSHDYSALTMEFMWQGKQVQLVGDKTLASQSVSFHQLQAMMQKADIAELFAITQTSSMPCPELDSTFPGDLPALFTVLLERFAAIFAQPIGLPPHRSVDHRIHLIEGSKPVNVRPYRYPQFQKAEMEKLIKEMLAQGIIIPSHSPFSSPVLLVRKKDGTWRFCVDYRALNAATIKDKFPIPTIDELLDELGGAIVFTKLDLRAGYHQIRLHNRDTYKTAFRTHDGHFEFLVMPFGLTNAPSTFQATMNQLFSQFLRRFVIVFFDDILIYSSSLDDHLQHLELVLTCLQHNCFYVKLSKCLFCQESIEYLGHIVSSKGYYRRFIAHYATIAAPLTDLLRHDSFCWSEEATTTFIALKHAMMAAPVLSLPDFSKEFIIETDASNVGIGAVLMQDGHPLAFFSKKLGPKLQAASVYIKELHAITEAVLKWRQYLLGHFFIIRTDHKSIKELLQQVIQTPDQQAYVRKLLGFQFCIEYKPGASNKVADALSRVPMDWPIEEDIETQSELWALVSSPTFGIVSQLRKENASDPVLLEFHNQHRQGTLVAPYTIVNGLLLHTGRYVLNPHSPLCNLVISEFHDTPSGGHAGVKQTLARIAVNFFWIGMRKAVESFVAACLICQQIKSPTQVPAGLLQPLPIPEAVWEDVTMDFITALPPSNGFTVILVVVDHLSKSAHFGSLSRTFTASKVAELFISLVVCHHGFPRSIVSDRDPVFISNFWRKLFELSGTKLAMSSAYHPQTDGQSEVVNRGVEQYLRAFTQDKPSSWVLYLPWAEFHYNTSFHSGLQMSPFEALYGRKPPTIPAYTRGATSISALDDNFTTRDELLRNLKANLLTAQNRMTQQANSHRRDFTFAVGDNVLVRLRPYRQLSVRLHRQHKLSKKFYGPYKILERIGPVAYKLQLPSGSRIHPVFHVSTLKPFRGQENPPHQDLPPESFDNQPVERPGTILAYRTVLVQGQLRPQLLVQWIDSPADEASWEDMASFQDCYPDFHLEDKVNFDGERNDTSPLVEGPRALVEGPIPYCICFVSGIYSDGSNCANCFNNVDNEAARREAVEATL 2057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05217 2057 SUPERFAMILY DNA/RNA polymerases 1 239 IPR043502 -
Vivi4g05217 2057 SUPERFAMILY Ribonuclease H-like 1635 1793 IPR012337 -
Vivi4g05217 2057 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 1600 1805 - -
Vivi4g05217 2057 MobiDBLite consensus disorder prediction 769 819 - -
Vivi4g05217 2057 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 1101 1241 - -
Vivi4g05217 2057 Pfam Retroviral aspartyl protease 917 1001 - -
Vivi4g05217 2057 FunFam Transposon Ty3-G Gag-Pol polyprotein 3 82 - -
Vivi4g05217 2057 Gene3D Acid Proteases 908 1031 IPR021109 -
Vivi4g05217 2057 Gene3D - 1535 1623 - -
Vivi4g05217 2057 FunFam Retrovirus-related Pol polyprotein from transposon 17.6-like protein 174 240 - -
Vivi4g05217 2057 Gene3D - 92 173 IPR043128 -
Vivi4g05217 2057 SUPERFAMILY Acid proteases 903 1002 IPR021109 -
Vivi4g05217 2057 Gene3D - 1181 1316 IPR043128 -
Vivi4g05217 2057 CDD RT_LTR 1 82 - -
Vivi4g05217 2057 Pfam Retrotransposon gag protein 648 736 IPR005162 -
Vivi4g05217 2057 FunFam Retrovirus-related Pol polyprotein from transposon 17.6-like Protein 1209 1241 - -
Vivi4g05217 2057 SUPERFAMILY Chromo domain-like 1906 1988 IPR016197 -
Vivi4g05217 2057 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 1 82 IPR000477 -
Vivi4g05217 2057 Pfam RNase H-like domain found in reverse transcriptase 1347 1441 IPR041577 -
Vivi4g05217 2057 Pfam RNase H-like domain found in reverse transcriptase 145 238 IPR041577 -
Vivi4g05217 2057 Gene3D - 174 239 - -
Vivi4g05217 2057 Gene3D - 1372 1442 - -
Vivi4g05217 2057 Gene3D - 1 86 IPR043128 -
Vivi4g05217 2057 MobiDBLite consensus disorder prediction 766 834 - -
Vivi4g05217 2057 SUPERFAMILY DNA/RNA polymerases 1082 1478 IPR043502 -
Vivi4g05217 2057 CDD RT_LTR 1140 1316 - -
Vivi4g05217 2057 CDD RNase_HI_RT_Ty3 1378 1493 - -
Vivi4g05217 2057 Coils Coil 1825 1845 - -
Vivi4g05217 2057 CDD retropepsin_like 909 999 - -
Vivi4g05217 2057 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 1137 1316 IPR000477 -
Vivi4g05217 2057 ProSiteProfiles Integrase catalytic domain profile. 1633 1797 IPR001584 GO:0015074
Vivi4g05217 2057 FunFam Transposon Tf2-6 polyprotein-like Protein 1313 1383 - -
Vivi4g05217 2057 Gene3D - 1633 1832 IPR036397 GO:0003676
Vivi4g05217 2057 Pfam Integrase zinc binding domain 1569 1624 IPR041588 -
Vivi4g05217 2057 FunFam Transposon Tf2-6 polyprotein-like Protein 92 181 - -
Vivi4g05217 2057 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 1 81 IPR000477 -
Vivi4g05217 2057 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 1156 1315 IPR000477 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05217 Vivi-Chr4 184211530 184237856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05217 2005 2057 CPP Transcription Factor Family AT4G29000 54.930 2.12e-13 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05217 - - vvo:131598495 4101.59