Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05200 ATGGAGGATGAATCCAACAATGATATAATTGTATACGATGTAAGCTTCGACAAGAATATAAGCAGCAAGAATGTTGTTTCGGTGGCAAACGGTGGTCTCGGTGTTGGGAGATTTGAGAATGTGTCTCTGTATGTTAGAGATCTTGATGGGAATATGAATGAGGGTCAGCTTTATGAACTATCCAGTCAGATTGCTCAGATGGTTTTCATAGGGGTTTGTAGGAATCAGACCAAGAGATCATCGCTTGAATATGCTTATGTCAACTTCTCTAATGCTCATGATGATAACAATACATTGCATGATACCTTTGCTACTTTTGGACATGTTCTTTCTTGTAAGATAGCTATTGACGATATTGGTCAGTCAAGAGAATATGGGTTTGTTCAATTTGACAATGATGCCATTGGTCAATCAAGAGGATATGGGTTTGTTCAATTTGACAATGATGCCATTGGTCAATCAAGGGGATATGGGTTTTTTTTATTTGTGGGGAGGGCTCAGATAAAACCAAAAAGGAAGGTAGAGTTAAAAGCCAAATTTGAGCAAGAAAAGATAAAAAGGTAAGAGAAATGAAAGGGTGCTAATTTGTACTTGAAAAATCTTGATGACAATCTTAATGAAGAAAAGTTGAAGGAGTTATTTTCTGAGATTGGAACAATAACATCGGGTAAGAAAGAAAAATTGGATTACAATATGAGTTGA 702 0.3618 MEDESNNDIIVYDVSFDKNISSKNVVSVANGGLGVGRFENVSLYVRDLDGNMNEGQLYELSSQIAQMVFIGVCRNQTKRSSLEYAYVNFSNAHDDNNTLHDTFATFGHVLSCKIAIDDIGQSREYGFVQFDNDAIGQSRGYGFVQFDNDAIGQSRGYGFFLFVGRAQIKPKRKVELKAKFEQEKIKRXEKXKGANLYLKNLDDNLNEEKLKELFSEIGTITSGKKEKLDYNMS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05200 233 Coils Coil 171 187 - -
Vivi4g05200 233 Gene3D - 43 94 IPR012677 -
Vivi4g05200 233 SUPERFAMILY RNA-binding domain, RBD 136 222 IPR035979 GO:0003676
Vivi4g05200 233 SUPERFAMILY RNA-binding domain, RBD 40 132 IPR035979 GO:0003676
Vivi4g05200 233 Coils Coil 189 190 - -
Vivi4g05200 233 Gene3D - 95 135 IPR012677 -
Vivi4g05200 233 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 132 IPR000504 GO:0003723
Vivi4g05200 233 Gene3D - 163 225 IPR012677 -
Vivi4g05200 233 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 222 IPR000504 GO:0003723
Vivi4g05200 233 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 132 IPR000504 GO:0003723
Vivi4g05200 233 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 92 IPR000504 GO:0003723
Vivi4g05200 233 PANTHER RNA BINDING PROTEIN 135 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05200 Vivi-Chr4 183962944 183973233 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05200 88 224 Eukaryotic Initiation Factors Gene Family AT1G49760 39.568 1.43e-19 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05200 K13126 - vvo:131598489 429.098