LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi4g05193	ATGTTTCTTCAATTGTTGTCAAAAACAAAAAACCAGACAACCATGTTGAACTCTCCTTCTCCTTCATCTTGTTCTTCTTCAAACATCATTAATCTCTTCAAATACACCATTCTTATTCTTTCACTACTTTTGTTTACACTTCCTAAAACAAACTCACTTTTCTTCAACATAACAAACTTCGACGACCCAACAGTTGCAAACAACATCTCATACCAAGGTGATGGAAAATCAGCCAACGGTTCCATCGATCTCAACAAAGTAAGTTACCTTTTCCGTGTTGGAAGAGCAATCTATTCACAGCCTTTACATTTATGGGACAAAAATACTAAAACTCTCACTGATTTCACTACAAGTTTCAGTTTTACTATTGATAAAGTGAATGATACTTCCTATGGTGATGGTTTTGTGTTTTATGTTGCTCCATTGGGTTATCAGATTCCACCTAATTCAGCTGGTGGTGTTTTTGGTCTTTTTAATGCTACTACTAATAGTAATGCTCTTATGAATTATGTTGTTGCTGTTGAGTTTGATACTTTTGTTGGGGCTACTGATCCACCTATGAGGCATGTTGGTATTGATGATAATTCTTTGACTTCTGTTGCTTTTGGAAAGTTTGATATTGATAATAATCTTGGTAAGATTTGTTATGTTTTGATTGATTATAGTTCTGATAAGAAGATGTTGGAAGTGTTTTGGTCTTTTCGTGGAAGGATTGTTAAAGGTGTTGGAAATGGAAATTCTTCACTGTCTTATCAGATTGATCTTATGCAGAAACTGCCTGAGTATGTGAATATTGGATTTTCGGCTTCGACAGGTCTTTCGACAGAAAGTAATGTTATTCATTCTTGGGAGTTTAGTTCGAATTTGAAGTCGGATTCATCGGAGGGTGTTGTGTTGGAGGGAAATGGAGGAAAAGGGTCGTTGAAAACGGTTGTGATAGTTGTTGCTGTCATTGTTCCGGTTATTTTGGTATTTTTGATAGCTAGTGTTGTTGGTTGGTTGATAGTGAAGAGGAAAAGGAAGAATGTTGATGATGGGCTTGATGAATATGGAATACCTGTTCCGGCGAAATTTGATTTGGATAAAGCCACAATACCGAGAAGATTCGAATATAGCGAATTAGTTGCAGCTACTAATGGTTTTGCTGATGATAGAATGCTTGGAAGAGGAGGGTATGGACAAGTTTACAAAGGTGCTTTGAGTTATTTAGGAAGAGTTGTTGCTGTGAAGAGGATTTTCGCCGATTTCGAGAATTCAGAAAGAGTTTTCATCAATGAGGTTCGGATTATAAGCCGTTTGATACATAGAAACTTGGTTCAATTCATAGGTTGGTGTCATGAACAAGGTGAGTTTCTCTTAGTTTTTGAATACATGCCTAATGGAAGCCTTGACACACATTTATTTGGTGACAAGAAAAGTTTGGCTTGGGAAGTAAGGTACAGAATTGCATTAGGTGTCGCGAATGCGCTGCGTTATCTTCACGAAGATGCCGAGCAATGTGTTCTTCACAGAGATATCAAATCGGCTAATGTGTTGTTGGACACTGATTTCAGCACGAAGCTCGGCGATTTTGGGATGGCGAAACTCGTTGATCCTATGTTGAGAACACAAAGAACAGGTGTGGTTGGAACATATGGTTATCTAGCACCTGAATATATCAATGGTGGAAGGGCTAGTAAAGAATCTGATATGTATAGTTTTGGAATTGTTGCTTTGGAGTTAGCAACTGGGAGAAGGATTTTTCAAGATGGTGAGTTTCATGTGCCTTTGTTGAATTGGGTTTGGGGACTTTATGTTGAAGGGAATCTCATGAGTGCTGTTGATGAGAGATTGAACATGGAATTTGATGCTAGTGAAATGAAGAGTTTGCTTACTGTAGGATTATGGTGTACTCATTCAAATGATAAAGAAAGACCTAAGGCTTATGAAGTGATTAAGGTTCTTCAAAATGAAATGGCATTACCTGAACTTCCACTTGATATGCATGATCGCGCTCCTCCTATTGTTGCCTTTAGGCCACCATCCAATGCTCCCTCATTGTCACCAAATATGACTAACAGTCTTGTTTGCGTTGGTCGTTAG	2082	0.3799	MFLQLLSKTKNQTTMLNSPSPSSCSSSNIINLFKYTILILSLLLFTLPKTNSLFFNITNFDDPTVANNISYQGDGKSANGSIDLNKVSYLFRVGRAIYSQPLHLWDKNTKTLTDFTTSFSFTIDKVNDTSYGDGFVFYVAPLGYQIPPNSAGGVFGLFNATTNSNALMNYVVAVEFDTFVGATDPPMRHVGIDDNSLTSVAFGKFDIDNNLGKICYVLIDYSSDKKMLEVFWSFRGRIVKGVGNGNSSLSYQIDLMQKLPEYVNIGFSASTGLSTESNVIHSWEFSSNLKSDSSEGVVLEGNGGKGSLKTVVIVVAVIVPVILVFLIASVVGWLIVKRKRKNVDDGLDEYGIPVPAKFDLDKATIPRRFEYSELVAATNGFADDRMLGRGGYGQVYKGALSYLGRVVAVKRIFADFENSERVFINEVRIISRLIHRNLVQFIGWCHEQGEFLLVFEYMPNGSLDTHLFGDKKSLAWEVRYRIALGVANALRYLHEDAEQCVLHRDIKSANVLLDTDFSTKLGDFGMAKLVDPMLRTQRTGVVGTYGYLAPEYINGGRASKESDMYSFGIVALELATGRRIFQDGEFHVPLLNWVWGLYVEGNLMSAVDERLNMEFDASEMKSLLTVGLWCTHSNDKERPKAYEVIKVLQNEMALPELPLDMHDRAPPIVAFRPPSNAPSLSPNMTNSLVCVGR	693

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi4g05193	693	SUPERFAMILY	Protein kinase-like (PK-like)	365	664	IPR011009	-
	Vivi4g05193	693	CDD	STKc_IRAK	387	650	-	-
	Vivi4g05193	693	Pfam	Legume lectin domain	54	292	IPR001220	GO:0030246
	Vivi4g05193	693	ProSiteProfiles	Protein kinase domain profile.	381	654	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi4g05193	693	Gene3D	Transferase(Phosphotransferase) domain 1	458	656	-	-
	Vivi4g05193	693	PANTHER	-	79	655	-	-
	Vivi4g05193	693	Gene3D	-	50	299	-	-
	Vivi4g05193	693	SMART	serkin_6	381	653	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi4g05193	693	ProSitePatterns	Legume lectins alpha-chain signature.	259	268	IPR000985	-
	Vivi4g05193	693	Gene3D	Phosphorylase Kinase; domain 1	366	457	-	-
	Vivi4g05193	693	CDD	lectin_legume_LecRK_Arcelin_ConA	55	289	IPR001220	GO:0030246
	Vivi4g05193	693	ProSitePatterns	Legume lectins beta-chain signature.	172	178	IPR019825	-
	Vivi4g05193	693	ProSitePatterns	Protein kinases ATP-binding region signature.	387	410	IPR017441	GO:0005524
	Vivi4g05193	693	SUPERFAMILY	Concanavalin A-like lectins/glucanases	42	290	IPR013320	-
	Vivi4g05193	693	Pfam	Protein kinase domain	382	645	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi4g05193	693	FunFam	L-type lectin-domain containing receptor kinase IX.1	366	457	-	-
	Vivi4g05193	693	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	501	513	IPR008271	GO:0004672\|GO:0006468
	Vivi4g05193	693	FunFam	L-type lectin-domain containing receptor kinase IX.1	458	658	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi4g05193	Vivi-Chr4	183795345	183797683	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi4g05193	36	661	Receptor kinase-like Gene Family	AT5G10530	44.969	5.25e-178	520

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vivi4g05193		Pkinase	1e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi4g05193	-		-	gmx:100791220	879.396