Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05192 ATGTTTAACTCTCCGTCATCTTGTTCTTCTTCAAACATCATTAATCTCTGCAAATACATTATTCTTATTCTTTCACTACTCTTCTTCACACTTCCAGAAACAAACTCACTTTTCTTCAACATAACAAACTTCGACGACCCAACAGTTTCAAACAACATCTCATACCAAGGTGATGGACAATCAAGCAACGGTTCAATCAATCTCAACAAAGTAAGTGACATTTCCCGTGTAGGAAGAGCAATCTATTCACAGCCTTTACATTTATGGGACAAAAACACTAAAACTCTCACTCATTTCACTACAAGTTTCACTTTCACCATTGATAAAGTGAATAATAAATCCTATGCTGATGGTTTTGTGTTTTATATTGCTCCATTGGGTTATCAGATTCCACCAAATTCAGCTGGTAGTGTTTTTGGTCTTTTTAATGATACTACTAATAGTAATGCTCTTATGAATTATGTTGTTGCTGTTGAGTTTGATACTCATGTTGGAGCTACTGATCCACCGATGACACATGTTGGTATTGATGATAATTCTTTGACTTCTGTTGCTGTTGGGAAATTTGATATTGATAATAATCTTGGTAAGATTTGTTATGTTTTGATTGATTATAATTCTGATAAGAAGATGTTGGAAGTGTTTTGGTCCTTTCATGGAAGGATTGTTAAAGGTGTTGGAAATGGAAATGGAAATTCTTCACTGTCTTATCAGATTGATCTTATGCAGAAACTGCCTGAGTATGTGAATATTGGATTTTCGGCTTCGACAGGTCTTTTGAGGGAAAGTAATGTTATTCATTCTTGGGAGTTTAGTTCGAATTTGAAGTCGGATTCGTCGGTGGATGTTCAGTTGGAGAGGAATGGAGGAAAAGGGTCGTTGAAAACGGTTGTGATTGTTGTTCCGGTTGTTTTGGTGTTTTTGATAGCTAGTGTTGTTGGTTGGTTGATTGTGAAGAGGAAAAGGAAGAATGTTAATGATGGGCTTGATGAATATGGAATACCTGTTCCGGCGAAATTTGATTTGGATAAAGCCACAATACCGAGAAGATTTGAATATAGCGAACTAGTTGCAGCTACGAATGGTTTTGCTGATGATAGGATGCTTGGAAGAGGAGGGTATGGACAAGTTTACAAAGGTGCTTTGAGTTATTTAGGAAGAGTTGTTGCTGTGAAGAGGATTTTCGCCGATTTTGAGAATTCAGAAAGAGTTTTCATCAATGAGGTTAGGATTATAAGCCGTTTGATACATAGAAACTTGGTTCAATTCATAGGTTGGTGTCATGAACAAGGTGAGTTTCTCTTAGTTTTTGAATACATGCCTAATGGAAGCCTTGACACACATTTATTTGGTGACAAGAAAAGTTTGGCTTGGGAAGTAAGGTACAGAGTTGCATTAGGTGTTGTGAATGCGCTTCGTTATCTTCACGACGACGCCGAGCAATGTGTTCTTCATAGAGATATCAAATCAGCTAATGTGTTGTTGGACACTGATTTCAGCACGAAGCTCGGCGATTTCGGGATGGCGAAACTCGTTGATCCTATGTTGAGAACACAAAGAACAGGTGTGGTTGGAACATATGGTTATCTAGCACCTGAATATATCAATGGAGGAAGGGCTAGTAAAGAATCTGACATGTATAGTTTTGGAATTGTTGCTTTGGAGTTAGCAACTGGGAGAAGGATTTTTCAAGATGGTGAGTTTCATGTGCCTTTGATGAATTGGGTTTGGGGACTTTATGTTGCAGGGAATCTTATGAGTGCTGCTGATGAGAGATTGAATAAGGAATTTGATGTTAGTGAAATGAAGAGTTTGCTTATTGTAGGGTTATGGTGTACTCATTCAAATGATAAAGAAAGACCTAAGGCTTATGAAGTGATTAAGGTTCTTCAAAATGAAATGGCATTACCTGAACTTCCACTTGATATGCATGATCGTGCTCCTCCTATTGTAGGCTTTAGGCCGCTGTCCAATGCTCCCTCGTTGTCACCAAGTATGACTAACAGCCTTGTTTCCGTTGGACGTTAG 2028 0.3812 MFNSPSSCSSSNIINLCKYIILILSLLFFTLPETNSLFFNITNFDDPTVSNNISYQGDGQSSNGSINLNKVSDISRVGRAIYSQPLHLWDKNTKTLTHFTTSFTFTIDKVNNKSYADGFVFYIAPLGYQIPPNSAGSVFGLFNDTTNSNALMNYVVAVEFDTHVGATDPPMTHVGIDDNSLTSVAVGKFDIDNNLGKICYVLIDYNSDKKMLEVFWSFHGRIVKGVGNGNGNSSLSYQIDLMQKLPEYVNIGFSASTGLLRESNVIHSWEFSSNLKSDSSVDVQLERNGGKGSLKTVVIVVPVVLVFLIASVVGWLIVKRKRKNVNDGLDEYGIPVPAKFDLDKATIPRRFEYSELVAATNGFADDRMLGRGGYGQVYKGALSYLGRVVAVKRIFADFENSERVFINEVRIISRLIHRNLVQFIGWCHEQGEFLLVFEYMPNGSLDTHLFGDKKSLAWEVRYRVALGVVNALRYLHDDAEQCVLHRDIKSANVLLDTDFSTKLGDFGMAKLVDPMLRTQRTGVVGTYGYLAPEYINGGRASKESDMYSFGIVALELATGRRIFQDGEFHVPLMNWVWGLYVAGNLMSAADERLNKEFDVSEMKSLLIVGLWCTHSNDKERPKAYEVIKVLQNEMALPELPLDMHDRAPPIVGFRPLSNAPSLSPSMTNSLVSVGR 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05192 675 Gene3D Transferase(Phosphotransferase) domain 1 440 647 - -
Vivi4g05192 675 SMART serkin_6 363 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05192 675 PANTHER - 60 637 - -
Vivi4g05192 675 Pfam Protein kinase domain 364 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05192 675 FunFam L-type lectin-domain containing receptor kinase IX.1 348 439 - -
Vivi4g05192 675 SUPERFAMILY Protein kinase-like (PK-like) 347 645 IPR011009 -
Vivi4g05192 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672|GO:0006468
Vivi4g05192 675 Pfam Legume lectin domain 38 280 IPR001220 GO:0030246
Vivi4g05192 675 Gene3D - 34 285 - -
Vivi4g05192 675 Gene3D Phosphorylase Kinase; domain 1 348 439 - -
Vivi4g05192 675 ProSiteProfiles Protein kinase domain profile. 363 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05192 675 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 276 IPR013320 -
Vivi4g05192 675 CDD lectin_legume_LecRK_Arcelin_ConA 39 275 IPR001220 GO:0030246
Vivi4g05192 675 FunFam L-type lectin-domain containing receptor kinase IX.1 440 640 - -
Vivi4g05192 675 ProSitePatterns Legume lectins alpha-chain signature. 245 254 IPR000985 -
Vivi4g05192 675 ProSitePatterns Protein kinases ATP-binding region signature. 369 392 IPR017441 GO:0005524
Vivi4g05192 675 ProSitePatterns Legume lectins beta-chain signature. 156 162 IPR019825 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05192 Vivi-Chr4 183782764 183785204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05192 21 643 Receptor kinase-like Gene Family AT5G10530 43.602 9.09e-170 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vivi4g05192 Pkinase 6.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05192 - - vun:114193012 857.825