Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05163 ATGGGTCGCCATTCGTGTTGCTTAAAGCAAAAATTAAGAAAAGGCTTATGGTCTCCGGAAGAGGATGAGAAACTTTTTAATCACATAACTAGATTCGGCGTTGGTTGCTGGAGTTCTGTTCCTAAACAAGCAGGACTTCAAAGATGTGGAAAAAGTTGTAGATTGAGATGGATAAACTATTTGAGGCCGGATTTAAAGCGAGGAATGTTCTCACAACAAGAAGAGGATCTTATAATCAGTCTTCATGAGCTTCTTGGAAATAGGTGGGCTCAAATTGCAGCACAATTACCGGGGAGAACAGATAATGAAATAAAAAATTTCTGGAATTCATGTTTAAAGAAGAAGCTTCTAAAGCAAGGGATTGATCCAACAACACACAAGCCTCTAATAGAACCATATATTAAGGAAGAGAACAAAACAACGGAAACAACAACAACAACAATAACTCCGATGCAAATTCCATCGGTTACATCACAAGGTTCATCGTTTCTAATATCTGATTCGAATTACTATGATAGTAATGGCCTAACCGAAGCTTCTAGAGATATTTTTACTAGCAAATCAGCATTGGATCCTTTGTTCTGCTATGATTTCCAATCTGGTTATACCTTACCGATGAGTAATTATCAGAGTCAAACTCAATTTGGTATTAATTCAAGCTATGGATTTTCTTCAATGCCGAGTCTAACCAATTCGGATCACGCGATTGAGTTTTCAGACAACAATTCACCTTCAAAAATCAGTTCATTGTTCATGAATGATCAAGTCAAGGAAAGTAACTCAAGCAATAGCTCAAATATGAGCACTATTTATCCTTCTCAGATGAGAAACACTATCATCGAAAATAATAATAATGCAGGATTTTCATGGGATGGAGATAACAAATTGGACCCTTTGTTTCAGTTTCAAGCCAATGCTATAAAATCTGAAGATTTCGGAACTAGTTCTTGGGAAGAAGGACAAATCCAAACTCACAATTCAATAGATTTCAATAGCTATCCTTTATCATCACTTTCAGAAGATTTAACAGAAGCAAATTTTGATGTGTTCCATCATATATGA 1062 0.3588 MGRHSCCLKQKLRKGLWSPEEDEKLFNHITRFGVGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHELLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLLKQGIDPTTHKPLIEPYIKEENKTTETTTTTITPMQIPSVTSQGSSFLISDSNYYDSNGLTEASRDIFTSKSALDPLFCYDFQSGYTLPMSNYQSQTQFGINSSYGFSSMPSLTNSDHAIEFSDNNSPSKISSLFMNDQVKESNSSNSSNMSTIYPSQMRNTIIENNNNAGFSWDGDNKLDPLFQFQANAIKSEDFGTSSWEEGQIQTHNSIDFNSYPLSSLSEDLTEANFDVFHHI 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05163 353 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi4g05163 353 CDD SANT 70 109 IPR001005 -
Vivi4g05163 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi4g05163 353 Gene3D - 11 67 - -
Vivi4g05163 353 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi4g05163 353 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vivi4g05163 353 CDD SANT 17 61 IPR001005 -
Vivi4g05163 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi4g05163 353 PANTHER MYB DOMAIN PROTEIN 55 1 289 - -
Vivi4g05163 353 Gene3D - 69 146 - -
Vivi4g05163 353 SMART sant 66 114 IPR001005 -
Vivi4g05163 353 SMART sant 13 63 IPR001005 -
Vivi4g05163 353 FunFam Transcription factor MYB86 69 137 - -
Vivi4g05163 353 FunFam MYB transcription factor 11 67 - -
Vivi4g05163 353 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi4g05163 353 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05163 Vivi-Chr4 183154680 183156438 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05163 1 140 MYB Transcription Factor Family AT4G01680 80.000 4.71e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi4g05163 Myb_DNA-binding 7.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05163 K09422 - gmx:100811140 517.309