Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05158 ATGGCATCATCATCCAGCTCATACAATTCACCTTGTGCCGCCTGCAAATTTTTGAGGAGAAAATGCATGCCAGGATGCATTTTTGCACCTTACTTTCCACCAGAAGAGCCACAAAAATTTGCAAACGTGCACAAAATATTTGGTGCTAGCAATGTCACAAAGCTTCTCAACGAACTCCTTCCACACCAAAGAGAGGATGCAGTGAACTCACTTGCCTACGAAGCCGAAGCACGAGTGAGGGATCCAGTTTATGGCTGTGTAGGTGCTATTTCTTTTCTTCAAAGACAGGTTCAGAGGCTCCAAAAGGAGCTTGATGCTGCTAACACCGATCTCCTTCGCTATTCTCTTACTGATATCCCCCCACCTCCACCGCCGTCATCTCTTCCTGTGCCACCGGGGATGGTGTCAGTTCAGCAAATGCCACAAAGACAGTTTAGTGGAAGTACTTATTCTTCTTTTCCTTATTCTCTTCCTTGGACTGATAATTCATCAGAGGACATGAGTGAGGGTGGAGGAGGAGGAAATCAATTGTGA 534 0.4588 MASSSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANTDLLRYSLTDIPPPPPPSSLPVPPGMVSVQQMPQRQFSGSTYSSFPYSLPWTDNSSEDMSEGGGGGNQL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05158 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 138 - -
Vivi4g05158 177 Pfam Lateral organ boundaries (LOB) domain 11 107 IPR004883 -
Vivi4g05158 177 Coils Coil 90 117 - -
Vivi4g05158 177 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Vivi4g05158 177 MobiDBLite consensus disorder prediction 156 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05158 Vivi-Chr4 182983419 182985483 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05158 1 170 AS2 family AT5G63090 65.969 1.52e-78 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi4g05158 LOB 2.4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05158 - - mtr:25493732 303.523