Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05157 ATGGCAAACTATCACCGGAACAACGTCGGAAACCTCGTTCTCGGCCACCACCACCACGACCACCACTCAACCAAACCATCAACATTCTCCAACAACTTCCGCCAATGGAACTCCCTCTCCGTCGCATCACTCCGCCGTCTCATCTTCGACGCCGTCACCTGCGGCGCCAGCTCCCGTTTCCACCGCCGCCGCAGCCTCGACGAATTCGACACCGAAGACTTCTCCTCCACAACAAGATCAAACTCTTTCTCCTCCAACGAGAAACATCAACAAAAACAACAGAATCAAACCTCCAAACCGAATGCAACAAAGTCGGAGAAGCTATCGGATCTTCTGAACATGGCGGAGTTGGAATCAGACGCTGAGGCGAAGAAAAAGGAAGAAGCTCTAGAGGAACTGAAACACCTCGTGAAGGATTTGCATCACGAAGAGGATTCAGTGAAGAAACGAGAAGCTGCAACCACCGTGAGAATGCTCGCGAAAGAGAATTTGGAAGTTCGAGGAACACTCGCGATGCTCGGAGCGATTCCACCTCTCGTCACAATGCTCGATTCGCCAAACCTCGATTCTCAGATCGCGTCACTCTACGCGTTGCTCAATCTCGGAATCGGAAACGATGCAAATAAAGCAGCCATTGTTAAAGTTGGTTCTGTTCATAAGATGCTTAAGCTTGTTGAATCTTTAGATGATACTGATTCCGCGGTTTCTGAAGCGATTGTTGCGAATTTCCTTGGATTGAGTGCTTTGGATTCGAATAAACCGATAATCGGGTCGTCTGCTGCAATACCGTTTTTAGTTAGAACTCTTACGAGTTTAGATAAGAAAAATAGTAGCAATCAAGCTAAGCAGGATGTTCTTAGAGCGCTTTACAATCTTTCAATCTTTCCGGCGAATATTCCGTTCATTTTGGAAACTGATTTGGTTCCGTTTCTGGTAAACTCGATTGGTGACATGGAAGTAACGGAAAGAAACCTTTCGATTCTTAGCAACTTGGTGTCAAGTAGAGCGGGTAGAAAAGCGATCAGTGCTGTCCCTGATGTGTTTCCTATATTGGTCGATGTATTGAATTGGACTGATTCACCTGAATGCCAGGAGAAGGTTTCGTATGTTTTGATGGTTATGTCGCATAAATCTTATAGTGACAAGCAGGCCATGATTGAGGCAGGGGTTGTGTCATCGCTTCTTGAGTTGTCGCTTATTGGTACTACTCTGTCTCAGAATCGGGCGTCAAGGCTATTGGAAAGTTTGAGAATAGATAAAGGGAAACAAGTTTCAGGGAACTACGGCGGAGGAAATTTAGGCACTGCAGTCTCTGCCCCAATTTGCGGAACTTCATCATCATGTGCAAAACCAGACGGAGGAGGAGGAGGAAAAGAGTGTTCGGAAGAAGACGAAGATATGATGAGCGAAGAAAAGAAAGCAGTGAAGCAATTAGTCCAATTGAGTTTGCAAAACAACATGAGAAAGATCGCGAAGCGAGCCAACTTGCCTCAAGATATTGTTCCATCAGATCATTTTAAGTCACTCACTTCAAGTTCAACTTCAAAGAGTTTACCATTCTGA 1563 0.4555 MANYHRNNVGNLVLGHHHHDHHSTKPSTFSNNFRQWNSLSVASLRRLIFDAVTCGASSRFHRRRSLDEFDTEDFSSTTRSNSFSSNEKHQQKQQNQTSKPNATKSEKLSDLLNMAELESDAEAKKKEEALEELKHLVKDLHHEEDSVKKREAATTVRMLAKENLEVRGTLAMLGAIPPLVTMLDSPNLDSQIASLYALLNLGIGNDANKAAIVKVGSVHKMLKLVESLDDTDSAVSEAIVANFLGLSALDSNKPIIGSSAAIPFLVRTLTSLDKKNSSNQAKQDVLRALYNLSIFPANIPFILETDLVPFLVNSIGDMEVTERNLSILSNLVSSRAGRKAISAVPDVFPILVDVLNWTDSPECQEKVSYVLMVMSHKSYSDKQAMIEAGVVSSLLELSLIGTTLSQNRASRLLESLRIDKGKQVSGNYGGGNLGTAVSAPICGTSSSCAKPDGGGGGKECSEEDEDMMSEEKKAVKQLVQLSLQNNMRKIAKRANLPQDIVPSDHFKSLTSSSTSKSLPF 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05157 520 MobiDBLite consensus disorder prediction 447 473 - -
Vivi4g05157 520 MobiDBLite consensus disorder prediction 456 473 - -
Vivi4g05157 520 MobiDBLite consensus disorder prediction 504 520 - -
Vivi4g05157 520 Pfam Armadillo/beta-catenin-like repeat 169 201 IPR000225 GO:0005515
Vivi4g05157 520 MobiDBLite consensus disorder prediction 75 105 - -
Vivi4g05157 520 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 26 520 - -
Vivi4g05157 520 SUPERFAMILY ARM repeat 132 398 IPR016024 -
Vivi4g05157 520 SMART arm_5 163 203 IPR000225 GO:0005515
Vivi4g05157 520 SMART arm_5 205 248 IPR000225 GO:0005515
Vivi4g05157 520 SMART arm_5 249 294 IPR000225 GO:0005515
Vivi4g05157 520 SMART arm_5 295 333 IPR000225 GO:0005515
Vivi4g05157 520 Coils Coil 112 150 - -
Vivi4g05157 520 MobiDBLite consensus disorder prediction 494 520 - -
Vivi4g05157 520 Gene3D - 277 426 IPR011989 -
Vivi4g05157 520 Gene3D - 71 276 IPR011989 -
Vivi4g05157 520 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 174 216 IPR000225 GO:0005515
Vivi4g05157 520 MobiDBLite consensus disorder prediction 1 30 - -
Vivi4g05157 520 MobiDBLite consensus disorder prediction 70 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05157 Vivi-Chr4 182915817 182918008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05157 130 423 U-box Gene Family AT1G67530 31.229 8.23e-32 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05157 - - psat:127098188 862.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05157 4 182915817 182918008 Vivi3g01449 3 23844091 23846038 PCT