Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05156 ATGAGTAGCTTGGTTGAGAGGCTTCGAGTAAAATCTGATCGCACGCAGTTTTATACTATAGACTTGTCAGATGAGGATGATGACTTAATGCCCAGCAAAAGTCAGAAAACTCAGGAGAAGTTTGAGAGGATTGTTAGAAGCGATGCAAAAGAGCATTCCTGTCAAGCTTGCGGAGAGAGCGAAAATCTTCTGAGCTGTGAAACATGCACTTATTCTTTCCATCATAGGTGTTTACTCTTTCCACTAAAAAGCTCCCATCTGGACAACTGGATGTGCCCTGAATGTGTTAACCCACTTAATAGTATTGATAAGATATTAGATTGTAATATGCGTCCTGCTGTAGCTGGCAAAAGTGATGCTGAAAACTTGGAATCAAAACAAAGCTTGGTCAAACAATATCTTGTCAAGTGGAAGGGACTATCGTATTTGCACTGCAGATGGGTGCCAGAGGAAGAGTTTATGAAAGCTTTCAAGAATTATTCTCGATTAAAGACCAAAGTAAACAACTTTCATTGTCAACAGGCAGAAGTCAGACAATTGGATGAAGACTTTGTTGCCATTCGACCTGAATGGACTACTGTTGATCGAATACTTGCATGCAGGGGAAATGATAATGAGAAGGAATATCTTGTGAAGTGGAAAGAGCTTCCTTATGATGAATGCCATTGGGAGCTTGAGTCAGATATCTCTTTGTTTCAAGCAGAAATAGAGAGATTCAATATGTTTCAGTCTAGGACTAGGAAAATTTCTTATAGCAAGCAAAAAGGCAGGGTTAATGGTGATTCTGAATTGATAATGCAGCAGAAAGAATTTCAACAGTATGAACAAAACCCAGAGTTTCTTTCAGGGGGTGCACTACACCCATATCAACTTGAAGGATTGAACTTTCTACGATTCTCTTGGGCCAATGAAACCCATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACCATACAAAGTATCGCTTTCTTAGCATCTCTTTTCAAAGAAAATGTTTCTCCACATTTGGTGGTTGCTCCACTTTCTACACTACGAAATTGGGAGCGGGAATTTGCAACTTGGGCACCTCAAATGAATGTTGTTATGTATTGTGGATCTTCTCAAGCTCGTGGCATTATCAGAGAATATGAATTTTACTTTTCGAAGAATAAAAAGAACAAAAAAGTTAAATCTAAAAAAATAGCTACTACAACAAAGTTGGAAAGCATTAAGTTTGATGTCCTTTTGACATCATATGAGATGATAAACTTGGACACAACATGGTTAAGACCTATTAAGTGGGAGTGCATGATAGTCGATGAAGGCCACCGTCTCAAAAACAAGGATTCTAAATTGTTTTCTTCATTAAATCAATACTCTAGCAGACATCGCGTGCTTTTGACAGGAACTCCTCTTCAGAATAATCTGGATGAACTGTTTATGCTTATGCATTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGTGGAGTTCCAAGAAGAGTTTAAGGATATCAATCAAGAGCAACAGATTTCAAGGCTTCATAAAATGTTGGCCCCACATCTCCTGCGAAGAGTGAAGAAAGATGTCCTGACTGAACTACCTCCTAAAAAGGAGCTTATTATACGTGTTGAATTGAGCAGCAAACAGAGAGAATATTATAAGGCAATTTTGACTCGTAATTATGAGATATTAACTCGCCGTGGTGGAGCACAAATTTCTCTTAACAATGTTGTCATGGAACTACGTAAACTATGTTGTCATCCATTCATGTTGGAAGGAGTTGAACCAGTTCTGAACGATGAAAAAGAAAAATACAAACAACTGCTGGAATCATCAGGGAAGTTGCAATTGTTAGACAAGCTGATGGTGAAGCTTAAAGAGCAAGGGCACAGAGTCTTAATATATTCCCAATTTCAGAGCATGCTGGACAAGCTTGAAGAATATTGTGCTTACAAGCAATGGCAGTATGAAAGGATAGATGGCAAGGTTGGTGGAGCTGAAAGACAAGTAAGGATAGATCGATTTAATGCTAAAAATTCTTCAAGATTTTGTTTCCTTCTTTCTACTAGAGCTGGGGGAGTGGGAATAAACCTTGCAACGGCTGACACAGTTATTATATACGACAGTGATTGGAATCCTCACGCCGATCTACAGGCTATGGCCAGAGCTCATCGACTTGGACAAACTAACAAGGTGTTGATTTATAGGCTTATAACCCGAGGAACAATTGAAGAAAGAATGATGGAAATGACAAAGAAGAAAATGGTGTTAGAACACTTAGTTGTTGGGAGCATAAAGACTCAAAACTTTAAACAGGAAGAGTTGGATGATATCATACGGTATGGGTCAAAGGAGTTGTTTGCTGATGAGAATGATGCGGTAGGAAAATCTCGTCAAATTCATTACGACGATGCTGCTATAGACAGATTGTTGAATCGCGATCAAGTTGGAGATGAAGAGGCCACTTTGGATGAGACTGACGAGGATGGGTTTTTGAAAGCCTTTAAGGTGGCAAATTTTGAATATATTGATGAAGCTGAGGCTGCAGAAGAAAAAAGTGAAATAGAGGGTAAATTTTCTGTCAGCGGCTCAGAAGGAAAAAATTACTGGGAGGAATTGCTAAAAGACAAGTATCAAGAGCAAAAAGTTGAAGAGCTTAATGTCTTGGGCAAAGGGAAGCGAAACCGCACAAAATTTCTGGGCGAAAATTTTTCTCGTCTAGAAGATGTAAGCTCTGACGGTGAGGATGACAATTATGAAGTGGATCTTACTGATGGCGATTCAAATTCAACAGGAACTACTACTGCTAAAAGACCTTCCAAAAAGAAAGCTCGTACTGCAGAGAACTTGGACCCACTTCCTTTAATGGAAGGCGAAGGAAAATCACTAAGAGTACTTGGTTTTAGTCAAAGTCAGAGGGCTGCTTTCCTTCAAATTTTAATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAGTTTATTTCCCACATAAAGCAGAAGACTTATGAAGAAATCAAAGAGTATGGAACCCTTTTCTTGTCTCATATTGCTGAAGAGATAAATGATTCACCTACATTCTCAGATGGTGTTCCAAAAGAAGGATTACGAATACAAGATGTACTTGTTAGAATTGCGGTTCTGCTATTGATAAAGGAAAAAGTGAAGTTTGCATCAGAAAATCCTGGTGCTCCACTTTTTTCAGATGACATCTTGTCACGCAATATAGGCTTGAAAGTTACAAAGACGTGGAAGGAGGAGCATGATTTAGTCTTACTGCATTCAATTTTGAAGCATGGGTATGGAAAGTGGCCAGCTATTGTTGATGATATGGATCTGAATATTCTGATGGTCATCTGTCAGGAGTTGAATATTCCATTCATAAATGTACCAGTAGGACAAGGTGGCTCTCATATACCAAATGGTGCAAATATGACAAATGCGGAATCCTCCAGCAATCAGTATAGGCAGAATAGCAGCAGCGTCATGGCAGTTAATGGGGCACATGGTTCTTGTGATGCTGGGAACCAAGAAAACTTACATCAAGAGTCCTCTACGTTATGTCAATTTAGAGAGATGCAAAGAAAACACGCTGAGTTTGTAAAAAAGAGGTTTCTTCTCTTAGAAAAGTGTATCAATTTTGAGTACCAAAAAGAATACAATGATGATATGAAAGCAAGGGAAGGGACCAATAATGAACTAAAAAATGACCCTACGGCTACAAATGTAGGAAGGCACATATTAGGGGAGACTCACACCGAAACGGTTGATCAACTGCCTCAATTAGAACCAATAACTTTTGAAGAAATCTGTGCTTCTGTTTGTGATAATAATCCAAATCGGTTGACATTATGTTATCTTTACAATGAGATGTGCGATGCTGTGGAGAGAAATACTGTGGATTTAGTTCAAGCATCACAGTCCAGAGAGCAGACAGAAGTCAATGCTATGGAGAGAAATACTGTGGATTTAGTTCAAGCATCACAGTCCAGAGAGCAGACAGAAGTCAATGCTATGGAGAATTTCCATGAACTTGCAACCAGTTGTGACCATGTGAACAGAATTCTAACACCACAAAATCAACCCACTTCAGAGCCAATAGCAAATTCTGATTTCAAACCAGATGGTATATCACAGACTGAAGTTTTGGAGCCTGAGTCCAATTTCATCATCCCTCAAGATGAAAGCAAATCTAGAGGTAATGGAGTCTGA 4191 0.3904 MSSLVERLRVKSDRTQFYTIDLSDEDDDLMPSKSQKTQEKFERIVRSDAKEHSCQACGESENLLSCETCTYSFHHRCLLFPLKSSHLDNWMCPECVNPLNSIDKILDCNMRPAVAGKSDAENLESKQSLVKQYLVKWKGLSYLHCRWVPEEEFMKAFKNYSRLKTKVNNFHCQQAEVRQLDEDFVAIRPEWTTVDRILACRGNDNEKEYLVKWKELPYDECHWELESDISLFQAEIERFNMFQSRTRKISYSKQKGRVNGDSELIMQQKEFQQYEQNPEFLSGGALHPYQLEGLNFLRFSWANETHVILADEMGLGKTIQSIAFLASLFKENVSPHLVVAPLSTLRNWEREFATWAPQMNVVMYCGSSQARGIIREYEFYFSKNKKNKKVKSKKIATTTKLESIKFDVLLTSYEMINLDTTWLRPIKWECMIVDEGHRLKNKDSKLFSSLNQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLVEFQEEFKDINQEQQISRLHKMLAPHLLRRVKKDVLTELPPKKELIIRVELSSKQREYYKAILTRNYEILTRRGGAQISLNNVVMELRKLCCHPFMLEGVEPVLNDEKEKYKQLLESSGKLQLLDKLMVKLKEQGHRVLIYSQFQSMLDKLEEYCAYKQWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGVGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMEMTKKKMVLEHLVVGSIKTQNFKQEELDDIIRYGSKELFADENDAVGKSRQIHYDDAAIDRLLNRDQVGDEEATLDETDEDGFLKAFKVANFEYIDEAEAAEEKSEIEGKFSVSGSEGKNYWEELLKDKYQEQKVEELNVLGKGKRNRTKFLGENFSRLEDVSSDGEDDNYEVDLTDGDSNSTGTTTAKRPSKKKARTAENLDPLPLMEGEGKSLRVLGFSQSQRAAFLQILMRFGVGDFDWKEFISHIKQKTYEEIKEYGTLFLSHIAEEINDSPTFSDGVPKEGLRIQDVLVRIAVLLLIKEKVKFASENPGAPLFSDDILSRNIGLKVTKTWKEEHDLVLLHSILKHGYGKWPAIVDDMDLNILMVICQELNIPFINVPVGQGGSHIPNGANMTNAESSSNQYRQNSSSVMAVNGAHGSCDAGNQENLHQESSTLCQFREMQRKHAEFVKKRFLLLEKCINFEYQKEYNDDMKAREGTNNELKNDPTATNVGRHILGETHTETVDQLPQLEPITFEEICASVCDNNPNRLTLCYLYNEMCDAVERNTVDLVQASQSREQTEVNAMERNTVDLVQASQSREQTEVNAMENFHELATSCDHVNRILTPQNQPTSEPIANSDFKPDGISQTEVLEPESNFIIPQDESKSRGNGV 1396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05156 1396 Gene3D - 1032 1208 - -
Vivi4g05156 1396 SUPERFAMILY Chromo domain-like 180 244 IPR016197 -
Vivi4g05156 1396 MobiDBLite consensus disorder prediction 904 941 - -
Vivi4g05156 1396 CDD CD2_tandem 190 239 - -
Vivi4g05156 1396 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Vivi4g05156 1396 SUPERFAMILY Chromo domain-like 66 162 IPR016197 -
Vivi4g05156 1396 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 483 IPR014001 -
Vivi4g05156 1396 SMART PHD_3 53 96 IPR001965 -
Vivi4g05156 1396 Gene3D - 180 241 - -
Vivi4g05156 1396 SMART chromo_7 99 168 IPR000953 -
Vivi4g05156 1396 SMART chromo_7 190 244 IPR000953 -
Vivi4g05156 1396 CDD CD1_tandem 98 171 - -
Vivi4g05156 1396 ProSiteProfiles Chromo and chromo shadow domain profile. 192 239 IPR000953 -
Vivi4g05156 1396 Gene3D - 100 174 - -
Vivi4g05156 1396 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Vivi4g05156 1396 Pfam PHD-finger 54 97 IPR019787 -
Vivi4g05156 1396 MobiDBLite consensus disorder prediction 1350 1396 - -
Vivi4g05156 1396 Gene3D - 278 527 IPR038718 -
Vivi4g05156 1396 SMART DUF1087_2 839 907 IPR009463 -
Vivi4g05156 1396 Pfam CHD subfamily II, SANT-like domain 928 1062 IPR009462 GO:0003677|GO:0006338
Vivi4g05156 1396 SMART helicmild6 637 721 IPR001650 -
Vivi4g05156 1396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 99 IPR013083 -
Vivi4g05156 1396 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 520 779 IPR027417 -
Vivi4g05156 1396 SMART DUF1086_2 905 1065 IPR009462 GO:0003677|GO:0006338
Vivi4g05156 1396 Pfam Helicase conserved C-terminal domain 608 721 IPR001650 -
Vivi4g05156 1396 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 611 772 IPR001650 -
Vivi4g05156 1396 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 252 518 IPR027417 -
Vivi4g05156 1396 Gene3D - 528 752 IPR027417 -
Vivi4g05156 1396 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Vivi4g05156 1396 Pfam SNF2-related domain 307 584 IPR000330 GO:0005524|GO:0140658
Vivi4g05156 1396 CDD SF2_C_SNF 606 732 - -
Vivi4g05156 1396 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 32 1353 - -
Vivi4g05156 1396 SMART ultradead3 282 495 IPR014001 -
Vivi4g05156 1396 Pfam CHD subfamily II, DUF1087 839 891 IPR009463 -
Vivi4g05156 1396 Pfam Chromo (CHRromatin Organisation MOdifier) domain 121 159 IPR023780 -
Vivi4g05156 1396 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 240 IPR023780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05156 Vivi-Chr4 182888718 182906192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05156 308 782 RAD5 or RAD16-like Gene Family AT1G02670 24.685 2.90e-30 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi4g05156 SNF2_N 4e-63 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05156 K11643 - gmx:100790230 1992.24