Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05155 ATGCAGAAAATGACTTTGGTGGGGGATGAACATAAGAAGAATGAAAAGTTTCCTATTGGAATGAGAGTTCTTGCTGTTGATGATGACAGAACATGTCTCATGATTTTGAAGAAACTTCTCCTTAAGTGTCAATATCATGTAACTACGGCTGAAAATGCGATAGACGCGCTGAATTTGTTGAGAGAAAACAAAAAGAATTTCGACTTAGTAATCAGTAATGTTCATATGCCAGATATGGATGGATTTAAGCTTCTTGAGCTTATTGGACTTGAGATGGATTTACCTGTCATAATGTTTTCTGCGAATGATGATCCGAAGATGGTGATGAAAGGGATTACTCATGGTGCTTGTGATTATCTGCTGAAACCTGTTAGATTGAAAGAGGTGCAAATTATTTGGCAGCATGTGATTAGGAAGAAGAAAAGTAAAAGAAGCAATTCGGATAGCGTAAATGGAGTAGATTCGGCTGTGACAGGAAGTTCGGATAAAAATGTAAGGCCGCCTAGAAAAAGAAAGGATAAGAAGGAAGAGGAGGAGGAGGAGGAGGAGAATGAAGATGATGATGATGACGATGAGGATCCATCGGCGCAGAAGAAGGCTCGAGTTGTTTGGGATGCTGAATTGCACCGCATGTTTGTTTCAGCTGTTAATCAATTAGGCATCGACAAGGCTGTGCCGAAAAAGATTCTTGATTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCCAGCCATCTCCAGAAATATAGACTCTATCTGAAAAAAATTAGTTGCGAGGAAAACCAACAAGCTAATATGGCAGCAGCCTTAGGAGGTTCTGCAGATACATCCTATTTCAGAATGAATTCTCTCAATGGAGTTGGAGGACATTTGCCAACAATGAACGGCGGCTCTACGCAGTTTCACAACAATCCTTTCAGACCCTTTCAATCTAATGGTATGAGTAACAACAGACTGAACACACCTGCTAATGTCAATAGTCACGGATCATACCAACCGGCCATAACTCGCGCCAATCCAAACGATATTCAAAGAACTCCAATTCCTCCTGTAGGGCTTGATCAATTGCAACACAATAGAGGTATTAACATTAGTCCTATTAACAACATAACCATTAAATTTCCAGATTATAGACCAAAAGTACCTTCTTCGGTTTTGGATATCTCAAACAATCCAATGATGATGGAATCAAACTCTTTTTCTTTCCCTTCACTTGAGAAAAGAAGATTCAATGATGTTTGGTCAAGCAATATGCAATTACCTGGAGTTACTAGTAATGCGCCATTTCAAGGTTGGGATAATAACCATAATAACAATAATCATGAAGGAAATTACCATTCTAATCATGTGATTGGTTCTTCTGTGATTCCTGCTGTTGAACAAGAAGAAAACTTGGACTACAATTATTGTGATTCCTTACATATGAGAGATAATCGCATCCCGGATTTACCTGAAGGGTCGTCGATGAGAGAACATCAAGTATATATGATGAACCAGCTGAAGTCACAAAACAATGGAATCTCTAAGAATATTGGTTCACTCGAAGACGTCGTCAATGACATGGTTAAACAGAAACAATTATATGCCAAGTTCTCTGGTGGGACATCAATGTGA 1617 0.3896 MQKMTLVGDEHKKNEKFPIGMRVLAVDDDRTCLMILKKLLLKCQYHVTTAENAIDALNLLRENKKNFDLVISNVHMPDMDGFKLLELIGLEMDLPVIMFSANDDPKMVMKGITHGACDYLLKPVRLKEVQIIWQHVIRKKKSKRSNSDSVNGVDSAVTGSSDKNVRPPRKRKDKKEEEEEEEENEDDDDDDEDPSAQKKARVVWDAELHRMFVSAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKKISCEENQQANMAAALGGSADTSYFRMNSLNGVGGHLPTMNGGSTQFHNNPFRPFQSNGMSNNRLNTPANVNSHGSYQPAITRANPNDIQRTPIPPVGLDQLQHNRGINISPINNITIKFPDYRPKVPSSVLDISNNPMMMESNSFSFPSLEKRRFNDVWSSNMQLPGVTSNAPFQGWDNNHNNNNHEGNYHSNHVIGSSVIPAVEQEENLDYNYCDSLHMRDNRIPDLPEGSSMREHQVYMMNQLKSQNNGISKNIGSLEDVVNDMVKQKQLYAKFSGGTSM 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05155 538 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Vivi4g05155 538 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Vivi4g05155 538 SUPERFAMILY CheY-like 20 146 IPR011006 -
Vivi4g05155 538 ProSiteProfiles Response regulatory domain profile. 22 137 IPR001789 GO:0000160
Vivi4g05155 538 SMART REC_2 21 133 IPR001789 GO:0000160
Vivi4g05155 538 CDD REC_typeB_ARR-like 23 137 - -
Vivi4g05155 538 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 328 IPR045279 GO:0009736
Vivi4g05155 538 PIRSF RR_ARR_type-B 3 536 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vivi4g05155 538 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Vivi4g05155 538 MobiDBLite consensus disorder prediction 148 162 - -
Vivi4g05155 538 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 196 255 IPR017930 -
Vivi4g05155 538 MobiDBLite consensus disorder prediction 143 198 - -
Vivi4g05155 538 MobiDBLite consensus disorder prediction 178 193 - -
Vivi4g05155 538 Pfam Response regulator receiver domain 23 129 IPR001789 GO:0000160
Vivi4g05155 538 Gene3D - 20 152 - -
Vivi4g05155 538 Gene3D - 195 258 - -
Vivi4g05155 538 FunFam Two-component response regulator 195 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05155 Vivi-Chr4 182878475 182881440 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05155 15 535 Response Regulator Gene Family AT2G25180 42.132 6.69e-115 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vivi4g05155 Response_reg 1.1e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05155 - K14491 psat:127097478 899.042