Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05154 ATGAAAATGACTTTGGTGGGGGATGAACATAAGAAGAATGAAAAGTTTCCTATTGGAATGAGAGTTCTTGCTGTTGATGATGACAGAACATGTCTCATGATTTTGAAGAAACTTCTCCTTAAGTGTCAATATCATGTAACTACGGCTGAAAATGCGATAGACGCGCTGAATTTGTTGAGAGAAAACAAAAAGAATTTCGACTTAGTAATCAGTAATGTTCATATGCCAGATATGGATGGATTTAAGCTTCTTGAGCTTATTGGACTTGAGATGGATTTACCTGTCATAATGTTTTCTGCGAATGATGATCCGAAGATGGTGATGAAAGGGATTACTCATGGTGCTTGTGATTATCTGCTGAAACCTGTTAGATTGAAAGAGGTGCAAATTATTTGGCAGCATGTGATTAGGAAGAAGAAAAGTAAAAGAAGCAATTCGGATAGCGTAAATGGAGTAGATTCGGCTGTGACAGGAAGTTCGGATAAAAATGTAAGGCCGCCTAGAAAAAGAAAGGATAAGAAGGAAGAGGAGGAGGAGGAGGAGGAGAATGAAGATGATGATGATGACGATGAGGATCCATCGGCGCAGAAGAAGGCTCGAGTTGTTTGGGATGCTGAATTGCACCGCATGTTTGTTTCAGCTGTTAATCAATTAGGCATCGACAAGGCTGTGCCGAAAAAGATTCTTGATTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCCAGCCATCTCCAGAAATATAGACTCTATCTGAAAAAAATTAGTTGCGAGGAAAACCAACAAGCTAATATGGCAGCAGCCTTAGGAGGTTCTGCAGATACATCCTATTTCAGAATGAATTCTCTCAATGGAGTTGGAGGACATTTGCCAACAATGAACGGCGGCTCTACGCAGTTTCACAACAATCCTTTCAGACCCTTTCAATCTAATGGTATGAGTAACAACAGACTGAACACACCTGCTAATGTCAATAGTCACGGATCATACCAACCGGCCATAACTCGCGCCAATCCAAACGATATTCAAAGAACTCCAATTCCTCCTGTAGGGCTTGATCAATTGCAACACAATAGAGGTATTAACATTAGTCCTATTAACAACATAACCATTAAATTTCCAGATTATAGACCAAAAGTACCTTCTTCGGTTTTGGATATCTCAAACAATCCAATGATGATGGAATCAAACTCTTTTTCTTTCCCTTCACTTGAGAAAAGAAGATTCAATGATGTTTGGTCAAGCAATATGCAATTACCTGGAGTTACTAGTAATGCGCCATTTCAAGGTTGGGATAATAACCATAATAACAATAATCATGAAGGAAATTACCATTCTAATCATGTGATTGGTTCTTCTGTGATTCCTGCTGTTGAACAAGAAGAAAACTTGGACTACAATTATTGTGATTCCTTACATATGAGAGATAATCGCATCCCGGATTTACCTGAAGGGTCGTCGATGAGAGAACATCAAGTATATATGATGAACCAGCTGAAGTCACAAAACAATGGAATCTCTAAGAATATTGGTTCACTCGAAGACGTCGTCAATGACATGGTTAAACAGAAACAATTATATGCCAAGTTCTCTGGTGGGACATCAATGTGA 1614 0.3891 MKMTLVGDEHKKNEKFPIGMRVLAVDDDRTCLMILKKLLLKCQYHVTTAENAIDALNLLRENKKNFDLVISNVHMPDMDGFKLLELIGLEMDLPVIMFSANDDPKMVMKGITHGACDYLLKPVRLKEVQIIWQHVIRKKKSKRSNSDSVNGVDSAVTGSSDKNVRPPRKRKDKKEEEEEEEENEDDDDDDEDPSAQKKARVVWDAELHRMFVSAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKKISCEENQQANMAAALGGSADTSYFRMNSLNGVGGHLPTMNGGSTQFHNNPFRPFQSNGMSNNRLNTPANVNSHGSYQPAITRANPNDIQRTPIPPVGLDQLQHNRGINISPINNITIKFPDYRPKVPSSVLDISNNPMMMESNSFSFPSLEKRRFNDVWSSNMQLPGVTSNAPFQGWDNNHNNNNHEGNYHSNHVIGSSVIPAVEQEENLDYNYCDSLHMRDNRIPDLPEGSSMREHQVYMMNQLKSQNNGISKNIGSLEDVVNDMVKQKQLYAKFSGGTSM 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05154 537 FunFam Two-component response regulator 194 257 - -
Vivi4g05154 537 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Vivi4g05154 537 Gene3D - 19 151 - -
Vivi4g05154 537 SUPERFAMILY CheY-like 19 145 IPR011006 -
Vivi4g05154 537 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
Vivi4g05154 537 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Vivi4g05154 537 ProSiteProfiles Response regulatory domain profile. 21 136 IPR001789 GO:0000160
Vivi4g05154 537 PIRSF RR_ARR_type-B 2 535 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vivi4g05154 537 Gene3D - 194 257 - -
Vivi4g05154 537 CDD REC_typeB_ARR-like 22 136 - -
Vivi4g05154 537 SMART REC_2 20 132 IPR001789 GO:0000160
Vivi4g05154 537 MobiDBLite consensus disorder prediction 147 161 - -
Vivi4g05154 537 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 254 IPR017930 -
Vivi4g05154 537 Pfam Response regulator receiver domain 22 128 IPR001789 GO:0000160
Vivi4g05154 537 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 327 IPR045279 GO:0009736
Vivi4g05154 537 MobiDBLite consensus disorder prediction 142 197 - -
Vivi4g05154 537 MobiDBLite consensus disorder prediction 177 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05154 Vivi-Chr4 182878472 182881440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05154 14 534 Response Regulator Gene Family AT2G25180 42.132 7.22e-115 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vivi4g05154 Response_reg 1.1e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05154 - K14491 psat:127097478 899.042
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05154 4 182878472 182881440 Vivi3g01441 3 23572714 23576149 PCT