Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05146 ATGGAAAGACTAAGAAAGGAACCATGCATCTTCTCTTCTCAAGAACTTCCTCAAAGTCCAACCACACCATCACAAAATCAACATGAAAAGAAGAAACAACAATCTATTGATCTTGAAGAAGATATCAAAATCACAAAGGTAGATGTTTCATTATTTGATTTAAATGTATCAACCAATGATGATTTTGTTCTTGAAGAAGCAATAGAACTCAATCTTATAACTTCTTTAGGTGTTGCTAATGATTCATCATTAGAAAACAAGAATAACCTTGTTGAGGTGGAACAAAGAGTTTTTTCTTGTAACTATTGTCATAGAAAATTCTATAGTTCACAAGCATTAGGTGGACACCAAAATGCTCACAAAAGAGAGAGATCCATAGCAAAAAGAGGACAAAGATTTGGAACACAGATTATAGCTTCTGCTTCTGCTTTTGGATTTCCAATTATGCATAACAAACAAAGCTATTCAAACATGGCTTCTTTGCCTCTTTATGGTGCTCTTGGAATTCAAGCACACTCCATGATTCAAAAGCCTTCTAATGGATTTGGAAACTCTTATGGACATCATCATCATCATCATCATCATGGTTGGTCAACATCATCATCAGCATTATCATCATCAAGAGGAAGTGTTGGAAGATTTGAAGTGGTGGATACTATGAAGAATTCTGCAGCTAGTAAAGAAATTAATGGATATTTTGTGAGTGGTGGAACAAGTTTGAAGACTCATATGAATCAAGAAGAAATGAAGAAGAAACATCTTGATTTATCTCTCAAGCTATGA 783 0.341 MERLRKEPCIFSSQELPQSPTTPSQNQHEKKKQQSIDLEEDIKITKVDVSLFDLNVSTNDDFVLEEAIELNLITSLGVANDSSLENKNNLVEVEQRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRGQRFGTQIIASASAFGFPIMHNKQSYSNMASLPLYGALGIQAHSMIQKPSNGFGNSYGHHHHHHHHGWSTSSSALSSSRGSVGRFEVVDTMKNSAASKEINGYFVSGGTSLKTHMNQEEMKKKHLDLSLKL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05146 260 MobiDBLite consensus disorder prediction 12 29 - -
Vivi4g05146 260 Gene3D Classic Zinc Finger 80 145 - -
Vivi4g05146 260 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 260 IPR044246 GO:0009788
Vivi4g05146 260 SUPERFAMILY beta-beta-alpha zinc fingers 94 125 IPR036236 -
Vivi4g05146 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Vivi4g05146 260 MobiDBLite consensus disorder prediction 180 204 - -
Vivi4g05146 260 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Vivi4g05146 260 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05146 Vivi-Chr4 182751821 182753075 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05146 69 260 C2H2 Transcription Factor Family AT5G10970 41.176 3.74e-34 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05146 - - lja:Lj5g3v0526470.1 253.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05146 4 182751821 182753075 Vivi3g01440 3 23528771 23529672 PCT