Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05136 ATGTCGAATCAGATACTACGACATACTGAATCTGACGTTCACCAGAATTTTTCAATCGTCATAGATATAAATTTCAAGGAAAGTAACATCTTAGGGGAGGGTGGTTTTGGATGTGTTTGCAAGGCTAGTTTGGATGATAATTTGGTGGTTGCTATCAAGAGGTTGAATTGTGAATGTCAGTATGCAGAAAGAGAGTATGAGAATGAAGTTGAATTGTTAAGTGAAATTCAACATCCAAATGTGATTTCTTTACTTGGTTGTGGAAGTCATGAGGATTCAAGGTTTATTATCTATGAGTTGATGCAAAATGGATCATTGGAAACTCAATTACATGGACCTTCTCATGGCTCTGCATTGACATGGCATATGAGAATGAAGATTGCTCTTGACACAGCAAGAGGCTTAAAGTATCTGCATGAGCATTGTTACCCTGCAGTGATCCATAGAGATCTAAAATCTTCTAATATTCTTTTGGATGCAAACTTCAATGCCAAGCTTTCTGATTTTGGTCTTGCAATAATTGATGGGTCCCAAAACAAGAATAACATCAAGCTTTCAGGCACATTGGGGTATGTAGCACCAGAGTATCTCTTAGATGGTAAATTGACTGATAAAAGTGATGTATATGCTTTTGGAGTTGTGCTTCTTGAGCTTCTATTAGGAAGGAAGCCTGTGGAAAAACTGAGTTCATCTCAATGCCAATCTATTGTCACATGGGCAATGCCACAGCTCACAGACAGATCCAAACTTCCAAACATTGTGGATAATGTGATTAAGAACACAATGGATCCTAAACACTTATTCCAGGTTGCTGCTGTGGCTGTATTATGTGTGCAACCAGAGCCATGTTACCGTCCGTTGATTGCAGATGTTCTACACTCCCTTATCCCTCTCGTACCGGTTGAGCTTGGAGGAACTCTCAGAGTTTCACAAGTGACACATCAACCTCCAAATTCTAGTTAA 963 0.3925 MSNQILRHTESDVHQNFSIVIDINFKESNILGEGGFGCVCKASLDDNLVVAIKRLNCECQYAEREYENEVELLSEIQHPNVISLLGCGSHEDSRFIIYELMQNGSLETQLHGPSHGSALTWHMRMKIALDTARGLKYLHEHCYPAVIHRDLKSSNILLDANFNAKLSDFGLAIIDGSQNKNNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGRKPVEKLSSSQCQSIVTWAMPQLTDRSKLPNIVDNVIKNTMDPKHLFQVAAVAVLCVQPEPCYRPLIADVLHSLIPLVPVELGGTLRVSQVTHQPPNSS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05136 320 Pfam Protein kinase domain 26 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05136 320 ProSiteProfiles Protein kinase domain profile. 25 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05136 320 FunFam probable receptor-like protein kinase At1g80640 101 300 - -
Vivi4g05136 320 PANTHER OS01G0750732 PROTEIN 23 298 - -
Vivi4g05136 320 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Vivi4g05136 320 Gene3D Transferase(Phosphotransferase) domain 1 101 300 - -
Vivi4g05136 320 SMART serkin_6 25 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05136 320 Gene3D Phosphorylase Kinase; domain 1 16 100 - -
Vivi4g05136 320 ProSitePatterns Protein kinases ATP-binding region signature. 31 53 IPR017441 GO:0005524
Vivi4g05136 320 Coils Coil 52 72 - -
Vivi4g05136 320 SUPERFAMILY Protein kinase-like (PK-like) 24 295 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05136 Vivi-Chr4 182589626 182592091 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05136 24 299 Receptor kinase-like Gene Family AT3G58690 48.936 5.18e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Vivi4g05136 Pkinase 3.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05136 - - qsa:O6P43_015740 517.694