Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05133 ATGACAATGAAGCTTCTTCCCATGTTTCTCATGTTTCATATGTTCATCCTTATTCTTCACAAACCCATTTTGGTTCTTGCTTCTGTTGTTGTTCCTTCACCTCAAGTTTCACCCTTTCCTCCAATCCTCCCTTCAATGACAATCATTGCTACCTCTCCAGGTGTTCATGATGGAGAAGATGAAGATGAAAAAATGGATTCACACAGGAAAAAGATAAGGGCTTTTGTGGTAGCTAGCACTGCTCTTAGTGCTATCATTTTGTGTCTGTTAAGCTTCTGGATTTACTACATCATAAATGGTTCGAAACCCAACAGGAAGAAGAACCTTAAAAACTCAGATTCTGAGAAAGGGCTTGGTTTTGCACCAATTTTGAGTAAATTCAATTCTGTGAAGAAGGTTGGTAAGAAAGGGTGTGTTCCAATCATTGACTATGAGCAAATAGAAAAAGGCACTGAAAATTTCAAGGAAAGTAACATCTTAGGTGAGGGTGGTTTTGGATGTGTTTACAAGGCTAGTTTGGATGATAATTTGGTGGTTGCAGTCAAGAGGTTGAATTGTGAATGTCAATATGCAGAAAGAGAGTATGAGAATGAAGTTGAATTGTTAAGTGAAATTCAACATCCAAATGTGATTTCTTTACTTGGTTGTGGAAGCCATGAGGATTCCAGGTTTATTATCTATGAGTTGATGCAAAATGGATCATTGGAAACTCAATTACATGGACCTTCTCATGGCTCTGCATTGACATGGCATATGAGAATGAAGATTGCTCTTGACACAGCAAGAGGCTTAAAGTATCTGCATGAGCACTGTTACCCTGCAGTGATCCATAGAGATCTAAAATCTTCTAATATTCTTTTGGATGCAAACTTCAATGCCAAGCTTTCTGATTTTGGTCTTGCAATAATTGATGGGTCCCAAAACAAGAATAACATCAAGCTTTCAGGCACATTGGGGTATGTAGCACCAGAGTATCTCTTAGATGGTAAATTGACTGATAAAAGTGATGTATATGCTTTTGGAGTTGTGCTTCTTGAGCTTCTATTAGGAAGGAAGCCTGTTGAAAAACTGAGTTCATCTCAATGCCAATCTATTGTCACATGGGCAATGCCACAGCTCACAGACAGAGCCAAGCTTCCAAACATTGTGGATAATGTGATTAAGAACACAATGGATCCTAAACACTTATTCCAGGTTGCTGCTGTGGCCGTGTTATGTGTGCAACCAGAGCCATGTTACCGCCCGTTGATTGCAGATGTTCTACACTCTCTTATCCCGCTCGTACCCGTTGAGCTTGGAGGAACTCTCAGAGTTTCGCAAGTGACACATCAACCTCCAAATTCTAGTTAA 1350 0.397 MTMKLLPMFLMFHMFILILHKPILVLASVVVPSPQVSPFPPILPSMTIIATSPGVHDGEDEDEKMDSHRKKIRAFVVASTALSAIILCLLSFWIYYIINGSKPNRKKNLKNSDSEKGLGFAPILSKFNSVKKVGKKGCVPIIDYEQIEKGTENFKESNILGEGGFGCVYKASLDDNLVVAVKRLNCECQYAEREYENEVELLSEIQHPNVISLLGCGSHEDSRFIIYELMQNGSLETQLHGPSHGSALTWHMRMKIALDTARGLKYLHEHCYPAVIHRDLKSSNILLDANFNAKLSDFGLAIIDGSQNKNNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGRKPVEKLSSSQCQSIVTWAMPQLTDRAKLPNIVDNVIKNTMDPKHLFQVAAVAVLCVQPEPCYRPLIADVLHSLIPLVPVELGGTLRVSQVTHQPPNSS 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05133 449 Pfam Protein kinase domain 155 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05133 449 SMART serkin_6 154 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05133 449 FunFam Protein kinase superfamily protein 121 229 - -
Vivi4g05133 449 Gene3D Phosphorylase Kinase; domain 1 123 229 - -
Vivi4g05133 449 FunFam probable receptor-like protein kinase At1g80640 230 429 - -
Vivi4g05133 449 PANTHER OS01G0750732 PROTEIN 31 427 - -
Vivi4g05133 449 ProSitePatterns Protein kinases ATP-binding region signature. 160 182 IPR017441 GO:0005524
Vivi4g05133 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672|GO:0006468
Vivi4g05133 449 ProSiteProfiles Protein kinase domain profile. 154 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05133 449 SUPERFAMILY Protein kinase-like (PK-like) 136 424 IPR011009 -
Vivi4g05133 449 Coils Coil 181 201 - -
Vivi4g05133 449 Gene3D Transferase(Phosphotransferase) domain 1 230 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05133 Vivi-Chr4 182573156 182576503 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05133 63 428 Receptor kinase-like Gene Family AT3G58690 43.200 6.08e-96 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Vivi4g05133 Pkinase 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05133 - - gmx:100812044 648.662