Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05129 ATGGCTTATCACAACCAGCATCTTTCACAAGAGTTACCAATCCACCATTTCACAGACCAATCTAACAACAACACTTTTCGTTCCATCTTACCAGACTCACCCGACCCTAACTCCAAACCTGATTCCGACCCAAACCAACTCCAAACCACACCTAACTGGCTCAACAACGCCATCCTTCGTACCCACTACACCGACAACAATAACAACAACAACAATAACGACGTTAACAACGACAACACCACCAACGATAACGGCAACGTTAACGGTCACGGTAACGGAGCTTCTAATTTTCTTAACCTCCAAACGGCTTCCGACTCCGTTCAAAACTCCGGCCAATGGCTTTCCCAGTCGATTCTCCATCGGCCCCACGGTGAAGTCATCGACGACGTCACCGATGTACACGATTTAGATGATTTGAAAGGCGACGGTAAAGGAGATGTTGCGGTGGTCGGAGACTGGCAGACGGGGAGATGGAAGGCGGAGATTATGTCGCATCCGTTGTATGAACAGTTGTTGTCGGCACATGTGGCGTGTTTGAGGATTGCGACGCCGGTGGACCAGTTGCCGAGGATTGATGCTCAGCTGGCACAGTCTCAGAATGTGGTCGAGAAATATGCCGCCTTCGGACAGAACATCGTCGGTGTAGATGACAAAGAACTCGACCACTTCATGTCACACTATGTTTTATTGCTGTGTTCCTTCAAAGAACAATTGCAACAACATGTCCGTGTCCATGCCATGGAAGCAGTAATGGCTTGTTGGGAGATAGAACAATCCTTACAAAGTCTAACAGGAGTTTCACCTGGAGAAGGTACGGGGGCAACAATGTCTGATGACGAAGATGAACAAGTAGACAGCGACGCAAATATGTTTGATGGTAGTTTTGATGGTGGCGGAGATAACATGGGATTTGGCCCTCTTATACCAACAGAGAATGAAAGGTCTTTAATGGAGCGCGTAAGGCAAGAGCTAAAGCATGAATTGAAACATGGTTACAAGGAGAAAATTGTCGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCCGGGAAACTTCCCGGTGACACAACCTCTGTCCTTAAGGCTTGGTGGCAATCACACTCTAAATGGCCTTATCCAACGGAGGAAGATAAGGCAAGGTTGGTGCAAGAAACTGGGTTACAATTAAAGCAGATTAACAACTGGTTTATCAATCAAAGGAAGAGAAATTGGCACAGCAATCCTTCATCTTCTACTGTCTTGAAGAGCAAGCGCAAAAGGTCTCAAAACTAG 1272 0.4654 MAYHNQHLSQELPIHHFTDQSNNNTFRSILPDSPDPNSKPDSDPNQLQTTPNWLNNAILRTHYTDNNNNNNNNDVNNDNTTNDNGNVNGHGNGASNFLNLQTASDSVQNSGQWLSQSILHRPHGEVIDDVTDVHDLDDLKGDGKGDVAVVGDWQTGRWKAEIMSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVEKYAAFGQNIVGVDDKELDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQVDSDANMFDGSFDGGGDNMGFGPLIPTENERSLMERVRQELKHELKHGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTVLKSKRKRSQN 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05129 423 CDD homeodomain 346 407 IPR001356 GO:0003677
Vivi4g05129 423 SMART KNOX2_2 209 265 IPR005541 GO:0003677|GO:0005634
Vivi4g05129 423 SMART ELK_2 323 344 IPR005539 GO:0003677
Vivi4g05129 423 FunFam homeobox protein knotted-1-like 3 isoform X1 344 405 - -
Vivi4g05129 423 ProSiteProfiles ELK domain profile. 323 343 IPR005539 GO:0003677
Vivi4g05129 423 Pfam Homeobox KN domain 363 402 IPR008422 GO:0003677|GO:0006355
Vivi4g05129 423 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 114 408 - -
Vivi4g05129 423 SMART KNOX1_2 156 200 IPR005540 GO:0003677|GO:0005634
Vivi4g05129 423 Pfam KNOX1 domain 159 199 IPR005540 GO:0003677|GO:0005634
Vivi4g05129 423 SUPERFAMILY Homeodomain-like 345 409 IPR009057 -
Vivi4g05129 423 Gene3D - 342 416 - -
Vivi4g05129 423 MobiDBLite consensus disorder prediction 265 284 - -
Vivi4g05129 423 SMART HOX_1 345 410 IPR001356 GO:0003677
Vivi4g05129 423 Pfam KNOX2 domain 216 264 IPR005541 GO:0003677|GO:0005634
Vivi4g05129 423 Pfam ELK domain 323 344 IPR005539 GO:0003677
Vivi4g05129 423 MobiDBLite consensus disorder prediction 11 32 - -
Vivi4g05129 423 ProSiteProfiles 'Homeobox' domain profile. 343 406 IPR001356 GO:0003677
Vivi4g05129 423 MobiDBLite consensus disorder prediction 403 423 - -
Vivi4g05129 423 MobiDBLite consensus disorder prediction 1 50 - -
Vivi4g05129 423 MobiDBLite consensus disorder prediction 62 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05129 Vivi-Chr4 182475270 182478393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05129 1 420 Homeobox Transcription Factor Family AT5G25220 66.892 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vivi4g05129 KNOX2 1.3e-20 No_clan