Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05124 ATGAATCACTTCTCTTTCTTTTTATCTATATTTTTTTATGTATACTTTTCACATGCCCCCAACCAAACTTTAGCAGTGACCTTAACATTACAAAACCAAACTGATCATCAAGCATTGCTCCAATTCAAACACTCAATAACCACTGACCCAAACGGAGTCCTAGACTCTTGGAATTCCTCCACACACTTCTGCAACTGGCATGGAATCACATGCAACGCCATGCATCAAAGAGTCACAAAGTTGAACTTACAAGGAAACAACTTGCATGGCACCTTTTCACCTTACATTGGAAACCTCTCTCGTTTAAGAAACATCAACCTCGAAAACAACAGCTTCACAGGACACATTCCACACGAACTCGGCCGGTTGTTAAAACTACATCAACTCTCTTTGAGCTATAACAAGTTTTCAGGAGACATTCCAAAGAGCTTGTCAAATTGCTCCAATCTTAGAGTCTTGCATTTGCTCGAAAACAATTTCACCGGCAAAATACCACCCGAATTCGCCTTTCTTCAAAAGCTTCTCGTAGTAGACATCGGAAAAAACAATTTAACCGGAGGAGTTCCTTCTTTCATAGGTAACCTTTCTTCCTTGACAAGTCTTGGCCTTGTTTTCAACAACTTAGAGGGACATATTCCACAGGAAATATGTCTCCTAAGAAACTTGAAAACTATAGAACTTATCGCGAACAATTTATCAGGTAAGTTTCCGCCTTGTTTCTATAATATGTCATCTCTTGAATCGATCTCAGTTACTCACAATCACTTCGTCGGTTCTCTTCCATCTAATATGTTCCAAACATTACCTAAGCTCCAAGTTTTCAAAATTGGAGTGAACAACATCTCAGGCAGAATCCCAACTTCCATTGCAAATGCTTCTACTTTGACATCATTTGACATTGGCGAAAACCTTTTTCGTGGACAAGTTCCAAGTCTAGGGAAGCTACGAGATCTTCGTTTGCTAAATCTCGAGATCAACATTCTAGGAAAAAATTCAACTCATGATTTAGATTTCTTGAAAACACTGACAAATTGTAGTAAGTTAGAAATTCTTAGTTTAACTGCTAATAGTTTTGGAGGTTTTCTTCCAAATTCTATAGGCAATTTCTCCCACAATCTTAGTGAACTATACCTTGGGGGTAATAACGTATCAGGAAAAGTTCCTAAGGAGTTGGGAAATCTAGTAAACTTAATCATCTTGAGCTTGGGACATAACAACTTTGAAGGAACTATTCCAACAAGTTTTGGACAGTTCAGGAAAATGCAACTGTTAGATTTGCGCGAAAACAAGTTGTCGGGGGAAATACCGAGTTTCATAGGCAATCTCAGTCAGTTGTCTGAGTTGTGGATGGAAGAAAACATGTTTGAAGGAAATATTCCTTTGAGTATAGGGAAGTGTCAAATGTTGATATTTCTAAACCTTTCACAAAACAATCTTCGAGGGCGCATACCCTTAGAAGTTTTTGGAATTTCGTCGTTATCGAAGGGATTAGACTTATCACATAATTCATTCAGTGGTAGTTTACCTTACGAAGTCGGTTTGTTGAAGAATATTGGTAAGCTGGATGTGTCTGAAAATCGTTTGTCTGGTGACATACCAAGAACCATAGATGGATGTGTAAGCTTAGAGTACCTTCGTTTACAAGGTAACTCCTTTAACGGAACCATACCTTCCAAACTGTCATCTATCAAAGGTCTTCGACATTTAGACTTGTCGAGGAATCAATTGTCTGGATCGATTCCTATAGACTTGCAGGATATGGCTTTTCTAGAATACTTGAATGTATCTTTCAACAAGTTGGAAGGTGAGGTTCCAATCAAAGGTGTCTTTCGAAATGCAGGTCGGTTGGGAGTGACAGGAAACAATAAGCTTTGTGGAGGGATTTTAGAGTTGCATCTATCACCATGCCCTGCCAAACACCAAAATTTGAGGTTGACTGCAGTGATCATTTGTGTGATTGTTTTCCTTATTATACTCATGTTAGCTCTAGCCATGTACTTGATGAGGAAAAGAAATAGAAAACCATCTTTTGATACACCGAAAATTGAACAACTAGATAAGGTTTCATACCAAGAACTACATCAAGGAACGGACGGGTTCTCAGATAGAAACTTGATTGGATCGGGAAGTTTTGGTTCTGTATACAAAGGAAATCTTGTATCACAAGATAAAGTTGTTGCTATAAAGATTCTGAACCTTGAAAAGAAAGGAGCACACAAGAGTTTTATCGCCGAATGTAATGCATTGAAAAATATCAGACATCGAAATTTGGTCAAGATTTTAACATGTTGTTCTAGTACTGATTATAAAGGTGAAGAATTCAAGGCTTTAGTTTTCGATTACATGAAAAATGGAAGCTTAGAAGACTGGCTTCATCCTAGGTCAGCGAATTCAGAACATCCAAGAATGTTGAGTCTTGTTCAAAGATTAAATATCATGATTGATATTGGTTATGCATTACATTATCTTCATCGCGAATGTGAGCAATTAGTCCTTCACTGTGATATAAAGCCGAGCAACATCCTTCTCGACGATGACATGGTTGCTCATGTGAGTGATTTTGGCATAACAAAACTTGTCTCGGTCGTTGATAATACATCTTATAAGGAAACTAGTACTGTCAGACTAAGAGGGACCATTGGTTATGCTCCTCCAGAGTATGGAATGAGTTCTGAAGTATCGAGCTGCGGTGATATGTATAGCTTTGGAATACTCGTGTTGGAAATGATTACTGGAAGACGACCGACGGATGAAAGGTTTGAAGATGGCCAAAATCTACATAGTTTTGTTGAGAATTCATTTCATGGCAGTATTATGCAGATTTTGGATCCAAATCTTGTACCAAGAGATATAGAGGCAAGAGTGGAGAAGTGCTTAGTTTCAGTTCTAAGGATTGGACTTGGTTGTTCAATGGAATCACCAAAAGAAAGAATGAACATAGTAGATGTTACTAAAGAGTTAGATATAATCAAGAAGGTCTTTCTTGATGGTGAGATAAACTAG 3003 0.3796 MNHFSFFLSIFFYVYFSHAPNQTLAVTLTLQNQTDHQALLQFKHSITTDPNGVLDSWNSSTHFCNWHGITCNAMHQRVTKLNLQGNNLHGTFSPYIGNLSRLRNINLENNSFTGHIPHELGRLLKLHQLSLSYNKFSGDIPKSLSNCSNLRVLHLLENNFTGKIPPEFAFLQKLLVVDIGKNNLTGGVPSFIGNLSSLTSLGLVFNNLEGHIPQEICLLRNLKTIELIANNLSGKFPPCFYNMSSLESISVTHNHFVGSLPSNMFQTLPKLQVFKIGVNNISGRIPTSIANASTLTSFDIGENLFRGQVPSLGKLRDLRLLNLEINILGKNSTHDLDFLKTLTNCSKLEILSLTANSFGGFLPNSIGNFSHNLSELYLGGNNVSGKVPKELGNLVNLIILSLGHNNFEGTIPTSFGQFRKMQLLDLRENKLSGEIPSFIGNLSQLSELWMEENMFEGNIPLSIGKCQMLIFLNLSQNNLRGRIPLEVFGISSLSKGLDLSHNSFSGSLPYEVGLLKNIGKLDVSENRLSGDIPRTIDGCVSLEYLRLQGNSFNGTIPSKLSSIKGLRHLDLSRNQLSGSIPIDLQDMAFLEYLNVSFNKLEGEVPIKGVFRNAGRLGVTGNNKLCGGILELHLSPCPAKHQNLRLTAVIICVIVFLIILMLALAMYLMRKRNRKPSFDTPKIEQLDKVSYQELHQGTDGFSDRNLIGSGSFGSVYKGNLVSQDKVVAIKILNLEKKGAHKSFIAECNALKNIRHRNLVKILTCCSSTDYKGEEFKALVFDYMKNGSLEDWLHPRSANSEHPRMLSLVQRLNIMIDIGYALHYLHRECEQLVLHCDIKPSNILLDDDMVAHVSDFGITKLVSVVDNTSYKETSTVRLRGTIGYAPPEYGMSSEVSSCGDMYSFGILVLEMITGRRPTDERFEDGQNLHSFVENSFHGSIMQILDPNLVPRDIEARVEKCLVSVLRIGLGCSMESPKERMNIVDVTKELDIIKKVFLDGEIN 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05124 1000 ProSitePatterns Protein kinases ATP-binding region signature. 706 729 IPR017441 GO:0005524
Vivi4g05124 1000 SMART serkin_6 700 995 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05124 1000 ProSiteProfiles Protein kinase domain profile. 700 995 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05124 1000 Gene3D Transferase(Phosphotransferase) domain 1 782 995 - -
Vivi4g05124 1000 Pfam Leucine Rich Repeat 566 585 IPR001611 GO:0005515
Vivi4g05124 1000 FunFam LRR receptor-like serine/threonine-protein kinase EFR 671 781 - -
Vivi4g05124 1000 PANTHER OS04G0122200 PROTEIN 219 985 - -
Vivi4g05124 1000 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 34 145 - -
Vivi4g05124 1000 Pfam Protein kinase domain 702 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05124 1000 Gene3D Ribonuclease Inhibitor 32 188 IPR032675 -
Vivi4g05124 1000 SMART LRR_typ_2 563 586 IPR003591 -
Vivi4g05124 1000 SMART LRR_typ_2 243 267 IPR003591 -
Vivi4g05124 1000 SMART LRR_typ_2 195 219 IPR003591 -
Vivi4g05124 1000 SMART LRR_typ_2 99 123 IPR003591 -
Vivi4g05124 1000 SMART LRR_typ_2 587 612 IPR003591 -
Vivi4g05124 1000 SMART LRR_typ_2 394 417 IPR003591 -
Vivi4g05124 1000 Gene3D Phosphorylase Kinase; domain 1 671 781 - -
Vivi4g05124 1000 FunFam LRR receptor-like serine/threonine-protein kinase EFR 334 642 - -
Vivi4g05124 1000 Pfam Leucine rich repeat 197 256 IPR001611 GO:0005515
Vivi4g05124 1000 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 782 998 - -
Vivi4g05124 1000 SUPERFAMILY Protein kinase-like (PK-like) 675 987 IPR011009 -
Vivi4g05124 1000 SUPERFAMILY L domain-like 343 626 - -
Vivi4g05124 1000 Gene3D Ribonuclease Inhibitor 331 636 IPR032675 -
Vivi4g05124 1000 Gene3D Ribonuclease Inhibitor 189 328 IPR032675 -
Vivi4g05124 1000 FunFam Leucine-rich repeat receptor protein kinase EMS1 164 263 - -
Vivi4g05124 1000 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Vivi4g05124 1000 SUPERFAMILY L domain-like 33 326 - -
Vivi4g05124 1000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 831 843 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05124 Vivi-Chr4 182401528 182404799 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05124 32 994 Receptor kinase-like Gene Family AT3G47570 45.112 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vivi4g05124 Pkinase 1.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05124 - - gmx:100785561 1201.42