Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05122 ATGGGGAAACCAGCTGGGAAAAGGAAGGATCATGAATCACCAAAAGCAAACAACAATCACAACAACAAGAAGGGTTACGAGCGTTCATCATCCTCAAAAGCATTGGATGATGACACAGCTATGTTCATCAACATGTCACAAGAGCTTAGAGAAGAAGGTAACAAACTTTTTTACCAGAAAAAAGATAATGAAGGTGCTATGTTAAAGTACGAAAAAGCCCTCAAACTCCTTCCTAAAAATCACATAGATGTTGCACATCTTCATACAAATATGGCTATGTGTTATATGCAATTGGGACTCGGTGAGTATCCTCGAGCAATCAATGAGTGCAACCTTGCTTTGCAGGTTTCGCCTCGGTATAGCAAAGCTCTTTTGAGGAGAGCTAAGTGTTATGAAGCTTTGAATCGGTTGGATTTGGCTATGAGGGATGTTAGAGTTGTTTTGAACGCTGAGCCGAATAATCTTTCGGCGTTGGAGGTTCTTGATAGCTTGAGAAATACTATGGATGAGAAAGGGATTACTATTGATGAGACCGAGATTGCCTTGGCTGCTATACAGCAGCAAGAGTCTCCCGCTGCTCGGTTTAGGAAAGTTGTTAATGAGAAGATTAAGAAAAAGAAGGGACATAAAGGGGAAGGTGAGGAAGAACGTAAAAGTAAGGTTGTTGAGAAGAAAGCCAATGTTGTGAATGTTAAGGTGAAGGGTAAAGATCCTAAGGATAAGGTTATGAAGGATAAGATTATGAAGGATAAGGTTATGAAGGATAAGGATAGTGAGGAAATTGTTAAGAAAGATAAAGCGGTTACTAGGACTGTGAAGTTGATATATGGAGAGGATATAAGATGGGCGCAATTTCCTGTGAATTGTAGTATGAAGTTGGTGAGGGATGTGATAAGGGATAGATTTCCGGGGTTAAAGGGTGTTCTTGTTAAGTATAAGGATAGGGAAGGTGATTTAGTTACTATTACTACTACTGCTGAATTAAGGTTAGCTGAGGATTGTCATGTGCTTGGCTCGATTCGGCTATATATTACGCAGGTGGATTTTGATCAGGAGCCGCGTTATGATGAAAAGACGAGTAGTGGTGAGGTGAGAGTGGGGAATGGAGTTGGAGAAGGAGACAGGGGTGTCAAGGCTAATAGGATGATTACTGTGGAGGATTGGCTTGTTCAGTTTGCGAGGCTGTTTAAGAACCATGTTGGATTTGATTCGGATTCGTATTTGGATATTCATGAGGTTGGGATGAAGCTGTATTCAGAGGCGATGGAGGATGCAGTGACCAATGATAGTGCTCAAGAGCTGTTTGATATTGCTGCGGATAAGTTTCAAGAGATGGCTGCTTTGGCTTTGTTTAATTGGGGGAATGTTCACTTGTCTAAAGCAAGGAGGCAAGTGCCTTTTCAGGAGGAAACGTCTTTCGAGCATGTTAAAGCTGCATATGAGTGGGCTAAGAAGGAGTACAAGGAAGCAGAAATGAGATACGAAGAATCTGTGAAAATCAAACCGGACTTTTACGATGGACTACTTGCTCTTGGGTATCAGCAGTTTGAGCAAGCAAAGCTCTGCTGGTGTTACTTAATTGCAAACAATAAGAAATTTGAAGTTGGCCCTTTTGAAGAGGTTCTACAGCTCTACAACAAGGCCGAGGACAGCATGGAGAAAGGGATGTTGATGTGGGAGGAGATTGAGGAACAGCGTTTGAATGGACTATCTAAATTAGATAAATATAATGCACAGTTAGAGAAAATGGGGTTACTTGGTCTTTTCAGGGATGTTTCTTCTGAAGAAGCCGACGAGCACGCTTCAAAGATGAGGACACAGATATATCTTTTATGGGGTACGTTATTGTACGAGCGTTCTGTTGTGGAATTTAAGCTCGGACTACCAACATGGGAGGAATGTTTGGAGGTTGCAGTTGAAAAGTTTGAACTAGCCGGAGCTTCTACAACTGACATTGGTGTCATGATAAAGAACCATTGTTCTAATGAAACAGCAATGGAAGGGTTTAAAATTGACGACATAGTGCAAGCATGGAATGAGATGTATGATGGGTGGCAGTTTGATGTTCCAACTTTCCGACTTGAACCATTGTTTCGTCGGCGTGTTCCAAGACTCCATGAAATCCTGGAGCAATTTTAA 2139 0.4156 MGKPAGKRKDHESPKANNNHNNKKGYERSSSSKALDDDTAMFINMSQELREEGNKLFYQKKDNEGAMLKYEKALKLLPKNHIDVAHLHTNMAMCYMQLGLGEYPRAINECNLALQVSPRYSKALLRRAKCYEALNRLDLAMRDVRVVLNAEPNNLSALEVLDSLRNTMDEKGITIDETEIALAAIQQQESPAARFRKVVNEKIKKKKGHKGEGEEERKSKVVEKKANVVNVKVKGKDPKDKVMKDKIMKDKVMKDKDSEEIVKKDKAVTRTVKLIYGEDIRWAQFPVNCSMKLVRDVIRDRFPGLKGVLVKYKDREGDLVTITTTAELRLAEDCHVLGSIRLYITQVDFDQEPRYDEKTSSGEVRVGNGVGEGDRGVKANRMITVEDWLVQFARLFKNHVGFDSDSYLDIHEVGMKLYSEAMEDAVTNDSAQELFDIAADKFQEMAALALFNWGNVHLSKARRQVPFQEETSFEHVKAAYEWAKKEYKEAEMRYEESVKIKPDFYDGLLALGYQQFEQAKLCWCYLIANNKKFEVGPFEEVLQLYNKAEDSMEKGMLMWEEIEEQRLNGLSKLDKYNAQLEKMGLLGLFRDVSSEEADEHASKMRTQIYLLWGTLLYERSVVEFKLGLPTWEECLEVAVEKFELAGASTTDIGVMIKNHCSNETAMEGFKIDDIVQAWNEMYDGWQFDVPTFRLEPLFRRRVPRLHEILEQF 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05122 712 Gene3D Tetratricopeptide repeat domain 35 173 IPR011990 GO:0005515
Vivi4g05122 712 Pfam PB1 domain 269 345 IPR000270 GO:0005515
Vivi4g05122 712 CDD PB1 271 344 - -
Vivi4g05122 712 SMART tpr_5 85 120 IPR019734 GO:0005515
Vivi4g05122 712 SMART tpr_5 471 504 IPR019734 GO:0005515
Vivi4g05122 712 SMART tpr_5 46 80 IPR019734 GO:0005515
Vivi4g05122 712 SMART tpr_5 121 154 IPR019734 GO:0005515
Vivi4g05122 712 SUPERFAMILY TPR-like 45 162 IPR011990 GO:0005515
Vivi4g05122 712 SUPERFAMILY CAD & PB1 domains 269 356 - -
Vivi4g05122 712 MobiDBLite consensus disorder prediction 1 33 - -
Vivi4g05122 712 PANTHER PROTEIN CLMP1 1 710 IPR044517 -
Vivi4g05122 712 Gene3D - 261 346 - -
Vivi4g05122 712 SMART PB1_new 269 347 IPR000270 GO:0005515
Vivi4g05122 712 ProSiteProfiles PB1 domain profile. 269 347 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05122 Vivi-Chr4 182390217 182394158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05122 36 154 Calmodulin-binding Proteins AT3G25230 32.031 4.08e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05122 K26538 - qsa:O6P43_015720 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05122 4 182390217 182394158 Vivi4g05122 4 182390217 182394158 PCT