LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi4g05118	ATGCAGGATCCCTCTGCTGAGCCACTTGTTGAGCCTATTGATTTTGTTAGTGTTTTTACTACTGATACAAAATTTAGCACTCGAGATAGCTTGTTGGAATGGGTTCGAGGAGAAGCAATGAAGTTAGGGTTTGTTATTGTTACTACAAGGTCCGATAATGGGTCAGATAGAAGAAGACAGACAATTGTACTTGGATGTGAAAGAGGAGGTGTTTATAAAAAATCCAGAAAATCCAACAAGCAGTTGAAACACCAAGACACACAATCTAAAAAATGTGAGTGTCCATTTAGATTGCGGGGTTATTTTTTAAGCTCTGGTGTATGGAAAGTTAATGTAGTGTGTGGAAAACACAATCATGAGATGGCCGAAAATTTAGAAGGTCATCCTATTGCAAGTCGGCTAAATGTGGAAGAAAAGAAACTTGTTTATGAGATGATAGATGACATGGTTCTTCCAAAAGATATTCTTATGACTTTAAAAAAACGAAGGCCAGACAATGTGACTACTATCAAATGTATTTATAATACTATTCACATATATAAAAAGTCTAAAAAAGAAGAAGCTGATGGTCTCATCAAAGAAGATCATCCAGAAATCTCTATTAAGGAAGAGATGGCTGATGGTATCGTCAACGAAGATCATTCTGAAATCTCTATTAAGGAAGAGATGGAAGCAATTCAGGCTTGTTTTGACAGTGCTGATTACAATACAAAGATATATATTAAAGATCGGTTGCGTCAAATAGCCTTTCCAGAAATGACTTCCCCGTATCCATCTCTAGAGAAGGGTAATGGAAACCTACCAGCCTTTCCAGAAACGACTTCACCGTGTCTATCTATAGACTTGGGTAATGGAAACCCACCAGCCTTTTCAGAAACGACTTCACCGTGTCCATCTCTAGACTTGGGTAATGGAAACCCTCCACTTGCTTATGATTTTGAAACTTTGTACATGTGA	957	0.3762	MQDPSAEPLVEPIDFVSVFTTDTKFSTRDSLLEWVRGEAMKLGFVIVTTRSDNGSDRRRQTIVLGCERGGVYKKSRKSNKQLKHQDTQSKKCECPFRLRGYFLSSGVWKVNVVCGKHNHEMAENLEGHPIASRLNVEEKKLVYEMIDDMVLPKDILMTLKKRRPDNVTTIKCIYNTIHIYKKSKKEEADGLIKEDHPEISIKEEMADGIVNEDHSEISIKEEMEAIQACFDSADYNTKIYIKDRLRQIAFPEMTSPYPSLEKGNGNLPAFPETTSPCLSIDLGNGNPPAFSETTSPCPSLDLGNGNPPLAYDFETLYM	318

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi4g05118	318	PANTHER	MALONATE-SEMIALDEHYDE DEHYDROGENASE	61	184	IPR010061	GO:0004491
	Vivi4g05118	318	Pfam	FAR1 DNA-binding domain	39	122	IPR004330	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi4g05118	Vivi-Chr4	182342302	182346754	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Vivi4g05118		FAR1	9.4e-07	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi4g05118	-		-	vvo:131596281	652.514