Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05076 ATGGATTCTCCAGAACCTTCTCAGATCAACAAAACTCCTTCTCTCTCCACTCTCAATCCATCCAACACTTCTTCTGACGAATCTCCTCAAGTTCAAGAATCTCCCTTTTTAAGATTTGTCAACACACTATCTCCAATACAGCCTGTTAAGGCTTCTCATGCGACACATGGGTTTCTTGGACTCAATTCTCCACCTCTTGTATTCAAATCGCCGCGTATTAGCGGTCACCACCGTGAAACGCAGTGCTCGGAAAGGCCTGAAGGAAACCATTTATCCGATGGAGAAATATCTCAAACTGACATTGGAGATAGTTGTCTTGGTGAAGCTCATGGTGATTTGAAAAAGTTGAATCCTCAGCAGCCACTGTCAGAGGGATTTACAATAGACGCTCAGAATGATGTGAAAACCCAAAGCTGTAGTCCTCCACCATCTGTCGATAAATACCTGGCTGATCCCGGGGATGATCAAATGTATACTGTCAACCTAGAAATGGAACAGTCCACTGACACAGTTGGGTCATCACTAACTGAGTCAGAGAAAGTTATATTAGAATTTGATAGGAGTGATGGTCCTGCTAACAAAGCAGAAGAACTTTTGCCTTTGTTAGAGGAATCTAATATGGTTCATCAAGAAAGGCCAGCATATTCTGAAAATCTTGCAATAATGGAAGGGGAGAAAGATGGTGCTGAATTGGTTTCTGAAAAAAACACAAATTTAGACTCCAGTTCTGGTGTGGATATTTTTGATAAACATTCTCATGAATCACTTCCCCAGTGTGCAGGAAATGATCAGCAGCATCATAGTGACTGTACACCTCAATTGATGCCTGATCCTATCCAGGATATTAAAGAGTTTGGAAATTGCAATGAGTTGATGTCAACCTCTAAAGAGGTTGAAAATTGCAACGAGACAATGTCAACCTCGCAAGTAAATTCAGAGAATATCACACAAGATGGTTCTGAGGCTAGTCTAAAGCATCATGGCATCCGTAGACGCTGCCTACAATTTGGGGAAGCTGCTTCTGTTGCTCTTGGAAGTAATAGGTCTCATGTTAAATTAAATGCAACTTCACGTAACATGAATATGCTTCCTATGACGGCTTCCAAGCCACCGGGCATTGGGTTGCATTTAAATAGCATTATAAATGCAGTGCCACTTAGTTCTTCATCTACTGGGGTGAGATTATCAGATGGTTTACAAGGGATGCACTCCAAATCTTCTATAACTTTGCATAAAGTGGAAAACGTGACAAGATCCTCGATTCCGACTGATATGGATACTCAATCGTTTAATGATACTAAAAACGAGAGCCATGAAACTGATGCCTTAGTAGCTGCAGATTATTTCATTTCTGAATCTCCTATCATGACAGAGTCCATTGACCTATATATGGAAAATGCACATGATAAGAAAAGAGTAAGCCATGCAGATACCGAGAATACAGAGGAATTCAATCATCCTAACACCTCCAAGAAAAAGAAGAAAACAAATACTGATGATGCCGGTGCCCCTAAGGGGTGCAACTGTAAGAAGAGTAAATGTTTGAAACTTTATTGTGATTGTTTTGGTGCCGGCCTCTTCTGTGGCGACAGCTGTGCTTGCGATAGCTGTGGTAATAGAGTAGAATTTCAGGAGACAGTTGTTGAGACAAAGCAACATATTGAATCTCGTAATCCAGATGCATTTGCTCCCAAGATTGTACCGTGTGCGGCCGATGTTCCAAAAAACAATATGGAAGATGTGAATATGTCAACACCGGCATCAGCTAGGCATAAACGAGGTTGCAATTGCAAAAGGTCAATGTGTACTAAAAAATATTGTGAATGTTTTCAGTCGAAAGTTGGATGCTCAAGCGGCTGTCGATGTGATGGATGTAAGAATGCCTTTGGCAAGAGAGAAGATTTTGTGGCAATGGAACATGCTGTGAGCAAAGAAAGGGAGAGCAGCATTGTTGAAGAAGCGTTAGACGACAAACTGCACAATAGACCGAAAATGGTGACAATCAGGACAGGCTTGTTACGACCAGCAAATCACCTCTCACCTGTAACACCGTTGTTGCAATGCTCCGACCAAGGCAAACAGGGTGCAAAGTCTAGACTTGCTTCCGCAGACTCGACTCAATCTTCCAAAAAATCACGGAGTAATCTTGCACATACAGAAACAAACGACTCTCAAAAGAATGCAGCTACAGGGGCTTCATCTAAAGAAAATGAGTGGATAGATCTTCCACCATACCAACTCTCCAACAGATGTGGTATTCGCCAGTTATCCGGGGGTTCTCTTCGTTGGCGCGGTAGTTCACCAATTACTCCAAGTATTAACTTAGATGATGAATCAGATGGCAAGCTCTTTGACATTCTAGAAGATGAAACACCTGATATACTGAAAGAAGCTTCAACTCCTACCAAGTCTGTGAAAGCAAATTCTCCACTCCAAAAGAGAGTTTCTCCTCCACAGAGTCATCTCCTTCGGATTGGATCAAGCTCTTCAGGAGGTGGCTTGAAAAGTGGCAGGAAATTTATATTGCAATCTGTTCCTTCTTTTCCGCCGTTGACCCCTTGTGCTGATTCCAAGGCCCTTTGCAATGGCAAGGAAGATTCAAGTAACAGCGCAGAGAAAATGACATAA 2628 0.4209 MDSPEPSQINKTPSLSTLNPSNTSSDESPQVQESPFLRFVNTLSPIQPVKASHATHGFLGLNSPPLVFKSPRISGHHRETQCSERPEGNHLSDGEISQTDIGDSCLGEAHGDLKKLNPQQPLSEGFTIDAQNDVKTQSCSPPPSVDKYLADPGDDQMYTVNLEMEQSTDTVGSSLTESEKVILEFDRSDGPANKAEELLPLLEESNMVHQERPAYSENLAIMEGEKDGAELVSEKNTNLDSSSGVDIFDKHSHESLPQCAGNDQQHHSDCTPQLMPDPIQDIKEFGNCNELMSTSKEVENCNETMSTSQVNSENITQDGSEASLKHHGIRRRCLQFGEAASVALGSNRSHVKLNATSRNMNMLPMTASKPPGIGLHLNSIINAVPLSSSSTGVRLSDGLQGMHSKSSITLHKVENVTRSSIPTDMDTQSFNDTKNESHETDALVAADYFISESPIMTESIDLYMENAHDKKRVSHADTENTEEFNHPNTSKKKKKTNTDDAGAPKGCNCKKSKCLKLYCDCFGAGLFCGDSCACDSCGNRVEFQETVVETKQHIESRNPDAFAPKIVPCAADVPKNNMEDVNMSTPASARHKRGCNCKRSMCTKKYCECFQSKVGCSSGCRCDGCKNAFGKREDFVAMEHAVSKERESSIVEEALDDKLHNRPKMVTIRTGLLRPANHLSPVTPLLQCSDQGKQGAKSRLASADSTQSSKKSRSNLAHTETNDSQKNAATGASSKENEWIDLPPYQLSNRCGIRQLSGGSLRWRGSSPITPSINLDDESDGKLFDILEDETPDILKEASTPTKSVKANSPLQKRVSPPQSHLLRIGSSSSGGGLKSGRKFILQSVPSFPPLTPCADSKALCNGKEDSSNSAEKMT 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05076 875 MobiDBLite consensus disorder prediction 696 734 - -
Vivi4g05076 875 MobiDBLite consensus disorder prediction 471 502 - -
Vivi4g05076 875 MobiDBLite consensus disorder prediction 799 834 - -
Vivi4g05076 875 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 858 IPR044522 GO:0003700
Vivi4g05076 875 MobiDBLite consensus disorder prediction 852 875 - -
Vivi4g05076 875 MobiDBLite consensus disorder prediction 1 33 - -
Vivi4g05076 875 ProSiteProfiles CRC domain profile. 503 630 IPR005172 -
Vivi4g05076 875 MobiDBLite consensus disorder prediction 471 500 - -
Vivi4g05076 875 SMART CXC_2 502 543 IPR033467 -
Vivi4g05076 875 SMART CXC_2 590 631 IPR033467 -
Vivi4g05076 875 MobiDBLite consensus disorder prediction 696 737 - -
Vivi4g05076 875 MobiDBLite consensus disorder prediction 760 779 - -
Vivi4g05076 875 MobiDBLite consensus disorder prediction 799 837 - -
Vivi4g05076 875 MobiDBLite consensus disorder prediction 760 774 - -
Vivi4g05076 875 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 505 540 IPR005172 -
Vivi4g05076 875 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 593 628 IPR005172 -
Vivi4g05076 875 MobiDBLite consensus disorder prediction 70 105 - -
Vivi4g05076 875 MobiDBLite consensus disorder prediction 72 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05076 Vivi-Chr4 181714443 181721751 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05076 7 853 CPP Transcription Factor Family AT3G22780 27.982 1.75e-60 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vivi4g05076 TCR 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05076 K21776 - gmx:547664 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05076 4 181714443 181721751 Vivi4g05076 4 181714443 181721751 ECH