Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05069 ATGTTTCCATCAGAGTCTCATCCCCACGAGCAAGAAGAGCAAGACGATCACGTCAACGAACACGGTTACAGCCAATGCAGTCTCACCGGAATCATTCTCCCGTCTCTCGGCGCCACCACCGTCTACGACAGCAACGTCAACGATCTCGGTCACCTCATCATCTCCCCATACAACCGCCATTATCAACAATGGAACAAGTTTCTGTTGATATGGGTTTTATACACTGCACTGGTTTGTCCTTTTGAATTTGGGTTTCTTTTGACTTCAAAAGGTCCACTTGCAATAGCAGACAATATTGTGAATGCATTTTTCTTGATTGACATTGTTCTCACATTCTTTGTGGCTTATGTTGAGAAAACAACTTATCTTCTCGTCGCCGATAAAAGGAAAATTGCTTATAGATATCTTAGCTCATGGTTCGTATGTGATGTCATGTCTACTATACCTTATGAAGTTTTTCATCAAGTGTTGCCACCTTTTGCCCGAGCATATGGTTACTTCAGTATTCTTCGCCTTTGGCGCCTTCGTAGAGCGAGTGCTATGTTCCGAAGGTTAGAAAAGGATAGGCATTATAACTACTTTTTGGTGCGCTGTGCAAAACTTCTTTGTGTAACACTATTTGCGACGCATGTAGCCGCGTGCGTTTTCTATTTTCTCGCTACAAGACCTAACCATAAAAACCCTACATGGCTATCACTTGTCTCGAATGCTTCCAACCAAACTATGTTGGACAGTTATGTTACATCAGTCTATTGGTCCATTGCGACACTCTCATCGGTGGGTTATGGTGATTTACATGCCGTAAACTCAGATGAAATGATTTTTACCATGCTCTATGTGACTTTCAATTTTGGACTTGCTGCATATCTGATAGGAAATATGACCAACTTGGTTGTTCACTGGAGTGATAGAACTAAGAGATATAGAGAAATTGTTGAAGCTGCATCGCATTTTGCTCGTAGGAATCGGTTACCTCAAAGTTTGCAAGAACAGATATATGCTCATTTTGAAATGAAGTATAAAACAAATGTAGAAGGACTGGAGCAGCAAGAGATAATCGATTCACTCCCAAAAGCCATTCAGTCAAGCATCGCACACTACCGATTCTTTGAACTTATTCAACAGGTTTACTTGTTTAGTGGAGTGTCAAGGGACCTGCTACATCAATTGGTGACAGAGTTAAAAGCCGAGTTTTTCCCTCCAAAGGAAGATGTAATCTTACAGAATGAAACACCTACAGACTTTTATATAGTGGTTTATGGAGCTGCTGATCTTATCATTCACCAGAAACCAATGGATCAGACAATTGACCAAGTATATACGGGAGATGTTTTTGGAGAACTAGGAGTGTTATGCTATAGCCCCCAAATTTTTACAGTTCGGACCAAGCTGTTTAGCCAGATCTTGCGTATGAGTCGATCAACATTTCGAAACCTTGTTTATAACAATGTTGAAGATGGAGCAATAATCATGAACAATTTTCTCAATCATGTGCAAAAATCAAAATATGGAATGTTGGAAGGAGTTATGGCTGAAATAGAGATACTGTTGGCAAGAGGAAAAATGGATTTGCCTATAAGTTTAATATTTGCAGCTCACAAAGGTGATGATATAATGTTGCATGAATTGCTGAAGAAAGGATCAGATCCAAATGAAATAGATAATAAAACTGGAAAGACGGCACTGCATACAGCAGCTTCTAAAGGTTGTGACCATTGTGTGGTTTTACTTCTAGAGTTTGGTGCTGATCCCAACGTAAAAGATTTTGATGGAAATATACCACTAGGGGAAGCAATTATGGGTAACCATGAATCAGTGACAAAACTACTTGTAGACAATGGTGCGGATATATCTTTAACTGATGTAGGTCGTTTAGCATGCTCTGCCGTTGAGAAAAGGGACATAAAATTGCTCAAAGATATTGCTCAATATGGCGGTGATGTGAAAAAGTCCTCAAATGGAACTACTGCACTTCATCTTGCTGTAGGTCAAGAAAATGTTGAAATGGTTAAGTTTCTTGTAGAACAAGGAGCCGATATTGATCTGCAAGATAGTTTTGGTTGGACTGCAAGAGCTTATGCAGATCATCAATGTCATGAAGAAATACAAAATATCTTTAAAAAAATTGAAAAAGATGACAAAGCGCCCCGTGCTATTCCTCCGATGCCAAATAATAATGAAGGATCTTGTATTGGAAAGTCTCAAAGCGACTCTTATCTACCAGCTACACCTCAAAGTCGTAGCTTGCCACCTATTCAAGAGTTGAAATGGTTGGATAATCATCAGAGAAGAAGGGTTACCCCTTTCCGAAATTCCTTTTCTGGAATGGTTTCAGTTCCCAGTCAAGAAAAAATTGATTCTCCTACATCTGAAAATAGTCGCACTACAACTACTACTACTGCTCCAACTGTGACTGAATTACCAACTAGAGTAATGATTAGTTGTCAAGGAAAAAGTGAATATCCTAAACGGCTTGTTTTTCTACCTAAATCGCTTCAAGAGTTGCTACTTATTGGTGCTGAAAAGTTTAACTACTCTCCCACTAAAATTCTGACTGAAGATGGAGCTGAAGTTGAAGACATATGCTTGATAAGAGAGGGTGATCATCTCATTCTTGTATGA 2622 0.3936 MFPSESHPHEQEEQDDHVNEHGYSQCSLTGIILPSLGATTVYDSNVNDLGHLIISPYNRHYQQWNKFLLIWVLYTALVCPFEFGFLLTSKGPLAIADNIVNAFFLIDIVLTFFVAYVEKTTYLLVADKRKIAYRYLSSWFVCDVMSTIPYEVFHQVLPPFARAYGYFSILRLWRLRRASAMFRRLEKDRHYNYFLVRCAKLLCVTLFATHVAACVFYFLATRPNHKNPTWLSLVSNASNQTMLDSYVTSVYWSIATLSSVGYGDLHAVNSDEMIFTMLYVTFNFGLAAYLIGNMTNLVVHWSDRTKRYREIVEAASHFARRNRLPQSLQEQIYAHFEMKYKTNVEGLEQQEIIDSLPKAIQSSIAHYRFFELIQQVYLFSGVSRDLLHQLVTELKAEFFPPKEDVILQNETPTDFYIVVYGAADLIIHQKPMDQTIDQVYTGDVFGELGVLCYSPQIFTVRTKLFSQILRMSRSTFRNLVYNNVEDGAIIMNNFLNHVQKSKYGMLEGVMAEIEILLARGKMDLPISLIFAAHKGDDIMLHELLKKGSDPNEIDNKTGKTALHTAASKGCDHCVVLLLEFGADPNVKDFDGNIPLGEAIMGNHESVTKLLVDNGADISLTDVGRLACSAVEKRDIKLLKDIAQYGGDVKKSSNGTTALHLAVGQENVEMVKFLVEQGADIDLQDSFGWTARAYADHQCHEEIQNIFKKIEKDDKAPRAIPPMPNNNEGSCIGKSQSDSYLPATPQSRSLPPIQELKWLDNHQRRRVTPFRNSFSGMVSVPSQEKIDSPTSENSRTTTTTTAPTVTELPTRVMISCQGKSEYPKRLVFLPKSLQELLLIGAEKFNYSPTKILTEDGAEVEDICLIREGDHLILV 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05069 873 PRINTS EAG/ELK/ERG potassium channel family signature 74 81 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi4g05069 873 PRINTS EAG/ELK/ERG potassium channel family signature 97 107 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi4g05069 873 PRINTS EAG/ELK/ERG potassium channel family signature 290 299 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi4g05069 873 PRINTS EAG/ELK/ERG potassium channel family signature 246 263 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi4g05069 873 PRINTS EAG/ELK/ERG potassium channel family signature 108 117 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi4g05069 873 MobiDBLite consensus disorder prediction 727 747 - -
Vivi4g05069 873 MobiDBLite consensus disorder prediction 715 747 - -
Vivi4g05069 873 SMART cnmp_10 378 495 IPR000595 -
Vivi4g05069 873 Gene3D Helix hairpin bin 304 367 - -
Vivi4g05069 873 SUPERFAMILY Ankyrin repeat 527 709 IPR036770 -
Vivi4g05069 873 ProSiteProfiles Ankyrin repeat profile. 590 622 IPR002110 GO:0005515
Vivi4g05069 873 CDD CAP_ED 378 491 IPR000595 -
Vivi4g05069 873 ProSiteProfiles Ankyrin repeat region circular profile. 653 684 - -
Vivi4g05069 873 FunFam Potassium channel KAT2 368 502 - -
Vivi4g05069 873 Gene3D Jelly Rolls 369 506 IPR014710 -
Vivi4g05069 873 ProSiteProfiles Ankyrin repeat region circular profile. 557 588 - -
Vivi4g05069 873 SUPERFAMILY Voltage-gated potassium channels 56 299 - -
Vivi4g05069 873 ProSiteProfiles Ankyrin repeat profile. 653 685 IPR002110 GO:0005515
Vivi4g05069 873 Pfam Ankyrin repeats (3 copies) 528 621 IPR002110 GO:0005515
Vivi4g05069 873 SMART ANK_2a 590 619 IPR002110 GO:0005515
Vivi4g05069 873 SMART ANK_2a 653 682 IPR002110 GO:0005515
Vivi4g05069 873 SMART ANK_2a 523 552 IPR002110 GO:0005515
Vivi4g05069 873 SMART ANK_2a 557 586 IPR002110 GO:0005515
Vivi4g05069 873 Gene3D - 524 708 IPR036770 -
Vivi4g05069 873 ProSiteProfiles KHA domain profile. 810 873 IPR021789 -
Vivi4g05069 873 Pfam Ankyrin repeats (many copies) 652 694 IPR002110 GO:0005515
Vivi4g05069 873 PANTHER POTASSIUM CHANNEL AKT1 25 872 IPR045319 GO:0005249|GO:0006813
Vivi4g05069 873 MobiDBLite consensus disorder prediction 777 800 - -
Vivi4g05069 873 ProSiteProfiles cAMP/cGMP binding motif profile. 378 497 IPR000595 -
Vivi4g05069 873 Pfam KHA, dimerisation domain of potassium ion channel 810 872 IPR021789 -
Vivi4g05069 873 SUPERFAMILY cAMP-binding domain-like 303 496 IPR018490 -
Vivi4g05069 873 Pfam Ion transport protein 62 305 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi4g05069 873 ProSiteProfiles Ankyrin repeat profile. 557 589 IPR002110 GO:0005515
Vivi4g05069 873 FunFam Potassium channel KAT3 63 300 - -
Vivi4g05069 873 PRINTS Ankyrin repeat signature 558 573 IPR002110 GO:0005515
Vivi4g05069 873 PRINTS Ankyrin repeat signature 669 683 IPR002110 GO:0005515
Vivi4g05069 873 Pfam Cyclic nucleotide-binding domain 398 480 IPR000595 -
Vivi4g05069 873 Gene3D - 63 299 - -
Vivi4g05069 873 ProSiteProfiles Ankyrin repeat region circular profile. 590 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05069 Vivi-Chr4 181606508 181611828 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05069 11 872 Ion Channels AT2G25600 51.039 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05069 K21867 - gmx:100808832 1036.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05069 4 181606508 181611828 Vivi4g05069 4 181606508 181611828 ECH
Vivi4g05069 4 181606508 181611828 Vivi3g01292 3 21322262 21327464 PCT