Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05068 ATGTTTCCATCAGAGTCTCATCCCCACGAGCAAGAAGAGCAAGACGATCACGTCAACGAACACGGTTACAGCCAATGCAGTCTCACCGGAATCATTCTCCCGTCTCTCGGCGCCACCACCGTCTACGACAGCAACGTCAACGATCTCGGTCACCTCATCATCTCCCCATACAACCGCCATTATCAACAATGGAACAAGTTTCTGTTGATATGGGTTTTATACACTGCACTGGTTTGTCCTTTTGAATTTGGGTTTCTTTTGACTTCAAAAGGTCCACTTGCAATAGCAGACAATATTGTGAATGCATTTTTCTTGATTGACATTGTTCTCACATTCTTTGTGGCTTATGTTGAGAAAACAACTTATCTTCTCGTCGCCGATAAAAGGAAAATTGCTTATAGATATCTTAGCTCATGGTTCGTATGTGATGTCATGTCTACTATACCTTATGAAGTTTTTCATCAAGTGTTGCCACCTTTTGCCCGAGCATATGGTTACTTCAGTATTCTTCGCCTTTGGCGCCTTCGTAGAGCGAGTGCTATGTTCCGAAGGTTAGAAAAGGATAGGCATTATAACTACTTTTTGGTGCGCTGTGCAAAACTTCTTTGTGTAACACTATTTGCGACGCATGTAGCCGCGTGCGTTTTCTATTTTCTCGCTACAAGACCTAACCATAAAAACCCTACATGGCTATCACTTGTCTCGAATGCTTCCAACCAAACTATGTTGGACAGTTATGTTACATCAGTCTATTGGTCCATTGCGACACTCTCATCGGTGGGTTATGGTGATTTACATGCCGTAAACTCAGATGAAATGATTTTTACCATGCTCTATGTGACTTTCAATTTTGGACTTGCTGCATATCTGATAGGAAATATGACCAACTTGGTTGTTCACTGGAGTGATAGAACTAAGAGATATAGAGAAATTGTTGAAGCTGCATCGCATTTTGCTCGTAGGAATCGGTTACCTCAAAGTTTGCAAGAACAGATATATGCTCATTTTGAAATGAAGTATAAAACAAATGTAGAAGGACTGGAGCAGCAAGAGATAATCGATTCACTCCCAAAAGCCATTCAGTCAAGCATCGCACACTACCGATTCTTTGAACTTATTCAACAGGTTTACTTGTTTAGTGGAGTGTCAAGGGACCTGCTACATCAATTGGATCTTATCATTCACCAGAAACCAATGGATCAGACAATTGACCAAGTATATACGGGAGATGTTTTTGGAGAACTAGGAGTGTTATGCTATAGCCCCCAAATTTTTACAGTTCGGACCAAGCTGTTTAGCCAGATCTTGCGTATGAGTCGATCAACATTTCGAAACCTTGTTTATAACAATGTTGAAGATGGAGCAATAATCATGAACAATTTTCTCAATCATGTGCAAAAATCAAAATATGGAATGTTGGAAGGAGTTATGGCTGAAATAGAGATACTGTTGGCAAGAGGAAAAATGGATTTGCCTATAAGTTTAATATTTGCAGCTCACAAAGGTGATGATATAATGTTGCATGAATTGCTGAAGAAAGGATCAGATCCAAATGAAATAGATAATAAAACTGGAAAGACGGCACTGCATACAGCAGCTTCTAAAGGTTGTGACCATTGTGTGGTTTTACTTCTAGAGTTTGGTGCTGATCCCAACGTAAAAGATTTTGATGGAAATATACCACTAGGGGAAGCAATTATGGGTAACCATGAATCAGTGACAAAACTACTTGTAGACAATGGTGCGGATATATCTTTAACTGATGTAGGTCGTTTAGCATGCTCTGCCGTTGAGAAAAGGGACATAAAATTGCTCAAAGATATTGCTCAATATGGCGGTGATGTGAAAAAGTCCTCAAATGGAACTACTGCACTTCATCTTGCTGTAGGTCAAGAAAATGTTGAAATGGTTAAGTTTCTTGTAGAACAAGGAGCCGATATTGATCTGCAAGATAGTTTTGGTTGGACTGCAAGAGCTTATGCAGATCATCAATGTCATGAAGAAATACAAAATATCTTTAAAAAAATTGAAAAAGATGACAAAGCGCCCCGTGCTATTCCTCCGATGCCAAATAATAATGAAGGATCTTGTATTGGAAAGTCTCAAAGCGACTCTTATCTACCAGCTACACCTCAAAGTCGTAGCTTGCCACCTATTCAAGAGTTGAAATGGTTGGATAATCATCAGAGAAGAAGGGTTACCCCTTTCCGAAATTCCTTTTCTGGAATGGTTTCAGTTCCCAGTCAAGAAAAAATTGATTCTCCTACATCTGAAAATAGTCGCACTACAACTACTACTACTGCTCCAACTGTGACTGAATTACCAACTAGAGTAATGATTAGTTGTCAAGGAAAAAGTGAATATCCTAAACGGCTTGTTTTTCTACCTAAATCGCTTCAAGAGTTGCTACTTATTGGTGCTGAAAAGTTTAACTACTCTCCCACTAAAATTCTGACTGAAGATGGAGCTGAAGTTGAAGACATATGCTTGATAAGAGAGGGTGATCATCTCATTCTTGTATGA 2523 0.394 MFPSESHPHEQEEQDDHVNEHGYSQCSLTGIILPSLGATTVYDSNVNDLGHLIISPYNRHYQQWNKFLLIWVLYTALVCPFEFGFLLTSKGPLAIADNIVNAFFLIDIVLTFFVAYVEKTTYLLVADKRKIAYRYLSSWFVCDVMSTIPYEVFHQVLPPFARAYGYFSILRLWRLRRASAMFRRLEKDRHYNYFLVRCAKLLCVTLFATHVAACVFYFLATRPNHKNPTWLSLVSNASNQTMLDSYVTSVYWSIATLSSVGYGDLHAVNSDEMIFTMLYVTFNFGLAAYLIGNMTNLVVHWSDRTKRYREIVEAASHFARRNRLPQSLQEQIYAHFEMKYKTNVEGLEQQEIIDSLPKAIQSSIAHYRFFELIQQVYLFSGVSRDLLHQLDLIIHQKPMDQTIDQVYTGDVFGELGVLCYSPQIFTVRTKLFSQILRMSRSTFRNLVYNNVEDGAIIMNNFLNHVQKSKYGMLEGVMAEIEILLARGKMDLPISLIFAAHKGDDIMLHELLKKGSDPNEIDNKTGKTALHTAASKGCDHCVVLLLEFGADPNVKDFDGNIPLGEAIMGNHESVTKLLVDNGADISLTDVGRLACSAVEKRDIKLLKDIAQYGGDVKKSSNGTTALHLAVGQENVEMVKFLVEQGADIDLQDSFGWTARAYADHQCHEEIQNIFKKIEKDDKAPRAIPPMPNNNEGSCIGKSQSDSYLPATPQSRSLPPIQELKWLDNHQRRRVTPFRNSFSGMVSVPSQEKIDSPTSENSRTTTTTTAPTVTELPTRVMISCQGKSEYPKRLVFLPKSLQELLLIGAEKFNYSPTKILTEDGAEVEDICLIREGDHLILV 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05068 840 PRINTS EAG/ELK/ERG potassium channel family signature 290 299 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi4g05068 840 PRINTS EAG/ELK/ERG potassium channel family signature 97 107 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi4g05068 840 PRINTS EAG/ELK/ERG potassium channel family signature 74 81 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi4g05068 840 PRINTS EAG/ELK/ERG potassium channel family signature 246 263 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi4g05068 840 PRINTS EAG/ELK/ERG potassium channel family signature 108 117 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi4g05068 840 ProSiteProfiles Ankyrin repeat profile. 524 556 IPR002110 GO:0005515
Vivi4g05068 840 MobiDBLite consensus disorder prediction 744 767 - -
Vivi4g05068 840 ProSiteProfiles Ankyrin repeat profile. 557 589 IPR002110 GO:0005515
Vivi4g05068 840 FunFam Potassium channel KAT3 63 300 - -
Vivi4g05068 840 Pfam KHA, dimerisation domain of potassium ion channel 777 839 IPR021789 -
Vivi4g05068 840 ProSiteProfiles Ankyrin repeat profile. 620 652 IPR002110 GO:0005515
Vivi4g05068 840 PANTHER POTASSIUM CHANNEL AKT1 25 390 IPR045319 GO:0005249|GO:0006813
Vivi4g05068 840 SUPERFAMILY Voltage-gated potassium channels 56 299 - -
Vivi4g05068 840 Pfam Ion transport protein 62 305 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi4g05068 840 SUPERFAMILY Ankyrin repeat 494 676 IPR036770 -
Vivi4g05068 840 MobiDBLite consensus disorder prediction 694 714 - -
Vivi4g05068 840 Gene3D Jelly Rolls 389 468 IPR014710 -
Vivi4g05068 840 ProSiteProfiles cAMP/cGMP binding motif profile. 389 464 IPR000595 -
Vivi4g05068 840 MobiDBLite consensus disorder prediction 682 714 - -
Vivi4g05068 840 Pfam Ankyrin repeats (3 copies) 495 588 IPR002110 GO:0005515
Vivi4g05068 840 ProSiteProfiles Ankyrin repeat region circular profile. 524 555 - -
Vivi4g05068 840 ProSiteProfiles Ankyrin repeat region circular profile. 620 651 - -
Vivi4g05068 840 PRINTS Ankyrin repeat signature 636 650 IPR002110 GO:0005515
Vivi4g05068 840 PRINTS Ankyrin repeat signature 525 540 IPR002110 GO:0005515
Vivi4g05068 840 Pfam Ankyrin repeats (many copies) 619 661 IPR002110 GO:0005515
Vivi4g05068 840 ProSiteProfiles KHA domain profile. 777 840 IPR021789 -
Vivi4g05068 840 Gene3D - 63 299 - -
Vivi4g05068 840 SUPERFAMILY cAMP-binding domain-like 303 463 IPR018490 -
Vivi4g05068 840 SMART ANK_2a 557 586 IPR002110 GO:0005515
Vivi4g05068 840 SMART ANK_2a 620 649 IPR002110 GO:0005515
Vivi4g05068 840 SMART ANK_2a 490 519 IPR002110 GO:0005515
Vivi4g05068 840 SMART ANK_2a 524 553 IPR002110 GO:0005515
Vivi4g05068 840 Gene3D Helix hairpin bin 304 367 - -
Vivi4g05068 840 Gene3D - 491 675 IPR036770 -
Vivi4g05068 840 CDD CAP_ED 378 458 IPR000595 -
Vivi4g05068 840 ProSiteProfiles Ankyrin repeat region circular profile. 557 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05068 Vivi-Chr4 181606508 181611828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05068 11 839 Ion Channels AT2G25600 47.921 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05068 K21867 - gmx:100808832 962.985