Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05054 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTGGATGTTTACATCCATGATTATCTTGTGAAGAGGGATTTGAAAGTTTCTGCTCAGGCTTTTCAAGCCGAAGGGAAGGTGTCATCTGATCCTGTTGCTATTGATGCTCCGGGAGGTTTTTTGTTCGAGTGGTGGTCGGTTTTCTGGGATATATTTATTGCTAGAACGAATGAGAAGCACTCGGAAGTTGCTGCGTCTTATATCGAGACACAATTAATTAAGGCCAGGGAGCAGCAACAGCAACAGCAGCAGCAGCAGCCACAACCTCAGCAGTCGCAACATCAACAACAACAGAATCAACAACAGCAGCAGATGCAGATGCAACAGATGCTGTTACAGAGGCAGCATCAGCAACAACAACAGCAGCAACAGCAACAACAACATCAGCAGCAACAACAGCAACAACCACAGCATCAGCAGCAACAACAGCAGCAGCAACAGCAGGGTAGGGATAGAGCTCATCTCTTGAATGGTGGTGGTGCAAATGGATTAGTTGGAAACCCTAGCACTGCAAATGCAATTGCAACAAAGATGTATGAGGAAAGGTTAAAACTTCCCCTTCAAAGAGATTCTTTGGAAGATGCTGCAATGAAGCAAAGATTTGGAGACCAAATTTTGGACCCAAATCATGCTTCAATTTTGAAGTCATCTGCAGCTACTGGCCAACCGTCAGGTCAAGTTTTACATGGTGCTGCTGGTGCAATGTCTCCACAAATTCAAGGTCGTAATCAGCAACTACCAGGGTCTACTCCGGATATAAAAACTGAGATTAATCCGGTTTTAAACCCTAGAGCTGCGGGTCCTGAATCGTTGATGGCAATTCCTGGATCAAATCAAGGTGGCAACAATTTGACTCTGAAAGGGTGGCCACTCACAGGATTGGAGCAACTTCGTTCTGGTTTACTCCAGCAACAAAAATCTTTCAATCCACAGCCTTTTCATCAACTTCCAATGTTGACACCACAACATCAGCAACAGCTTATGTTAGCACAGCAAAACCTGGCATCACCATCCGCCAGTGATGAAAGTAGAAGGCTCAGAATGCTACTGAGCAGTAGGAATATGGGCGTAGGTAAGGATGGCCTTTCAAATCCTGTCGGTGATGTAGTATCAAATGCTGGATCACCCCTTCAAGCAGGTGGTCCTCCTTTTCCTCGTGCTGATACGGATATGATAATGAAGATGAAACTGGCTCAGTTACAGCACCAACAACAGCAGAATGCCAATCCACAGCAGCAGCAACTTCAACAGCATTCTCTCTCAAATCAGCAATCTCAGTCTTCAAATCATAACATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTCACTGGAGACGGTAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGCTTCCAAAAACCAGACTGGAAGAAAGAGAAAGCAACCTGTTTCTTCTTCTGGTCCTGCCAATAGCTCAGGAACAGCTAACACAGCAGGCCCATCTCCGAGTTCAGCACCCTCAACTCCCTCAGGCTCAACTCATACCCCTGGTGATGTGATATCAATGCCTTCTTTACCTCATAATGGTAGTTCTTCCAAGCCATTAATGATGTTTGGCACTGATGGCACCGGAACTCTTACATCACCTTCAAACCAATTGTGGGATGATAAGGATATTGAATTGCAGGCAGATGTGGACCGCTTTGTTGAGGATGCATCTCTTGATGATAACGTTGAGTCTTTTTTATCTCATGATGATAACGACCCTAGAGATCCAGTTGGACGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAGTAAATTCTGTCCGGGCAAGCACAAGCAAAGTTGTTTGTAGTCATTTCTCATCTGATGGCAAATTGCTTGCAAGTGGCGGCCATGACAAAAAGGCTGTTTTATGGTACACAGATTCTCTAAAGCAGAAAGCTACTCTTGAAGAGCATTCATCTTTAATTACTGATGTCCGTTTTAGTCCAACCCTGCCTCGTCTTGCAACATCTTCATATGACAAAACTGTCCGTGTTTGGGATGTTGACAATCCAGGGTATTCGCTTCGTACCTTCACCGGTCATTCTGCATCTGTTATGTCACTAGACTTTCACCCCAATAAAGAGGACCTTATCTGCTCTTGTGACTTCGACGGTGAGATAAGATATTGGAGTATTAACAATGGCAGTTGTGCTAGAGTGTCGAAGGGTGGCACTGCACAGATGAGATTTCAACCTCGGCTAGGGAGATACCTTGCTGCAGCTGCAGAGAATGTCGTCTCTATACTTGATGTCGAGACACAAGCATGCCGATATTCACTAAAGGGCCACACAAAGTCAATACATTCCGTGTGTTGGGATCCATCCGGAGAGTTCTTGGCATCTGTCAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGAACTGGAAGCGAAGGGGAATGTGTTCACGAGCTTAGCTGTAACGGCAATAAATTTCACTCATGCGTTTTCCATCCAACGTACTCGTCGCTGCTGGTCATTGGCTGTTACCAGTCGTTGGAGCTGTGGAACATGACAGAGAACAAGACGATGACTCTGTCTGCTCACGACGGTCTTATTGCTGCACTGGCCGTTTCAACTGTAAACGGTTTGGTTGCTTCAGCTAGTCATGACAAGTTTGTCAAGCTCTGGAAGTGA 2691 0.4537 MSQTNWEADKMLDVYIHDYLVKRDLKVSAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQPQPQQSQHQQQQNQQQQQMQMQQMLLQRQHQQQQQQQQQQQHQQQQQQQPQHQQQQQQQQQQGRDRAHLLNGGGANGLVGNPSTANAIATKMYEERLKLPLQRDSLEDAAMKQRFGDQILDPNHASILKSSAATGQPSGQVLHGAAGAMSPQIQGRNQQLPGSTPDIKTEINPVLNPRAAGPESLMAIPGSNQGGNNLTLKGWPLTGLEQLRSGLLQQQKSFNPQPFHQLPMLTPQHQQQLMLAQQNLASPSASDESRRLRMLLSSRNMGVGKDGLSNPVGDVVSNAGSPLQAGGPPFPRADTDMIMKMKLAQLQHQQQQNANPQQQQLQQHSLSNQQSQSSNHNMHQQDKVGGGGGSVTGDGSMSNSFRGNDQASKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSGSTHTPGDVISMPSLPHNGSSSKPLMMFGTDGTGTLTSPSNQLWDDKDIELQADVDRFVEDASLDDNVESFLSHDDNDPRDPVGRMDVSKGFTFSEVNSVRASTSKVVCSHFSSDGKLLASGGHDKKAVLWYTDSLKQKATLEEHSSLITDVRFSPTLPRLATSSYDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKEDLICSCDFDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGTGSEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMTENKTMTLSAHDGLIAALAVSTVNGLVASASHDKFVKLWK 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05054 896 Gene3D - 595 745 IPR015943 GO:0005515
Vivi4g05054 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 697 739 IPR001680 GO:0005515
Vivi4g05054 896 MobiDBLite consensus disorder prediction 409 446 - -
Vivi4g05054 896 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 864 896 - -
Vivi4g05054 896 MobiDBLite consensus disorder prediction 140 163 - -
Vivi4g05054 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 654 689 IPR001680 GO:0005515
Vivi4g05054 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 779 819 IPR001680 GO:0005515
Vivi4g05054 896 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vivi4g05054 896 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 654 689 - -
Vivi4g05054 896 Coils Coil 118 145 - -
Vivi4g05054 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 864 896 IPR001680 GO:0005515
Vivi4g05054 896 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 896 - -
Vivi4g05054 896 MobiDBLite consensus disorder prediction 457 539 - -
Vivi4g05054 896 FunFam Transcriptional corepressor LEUNIG 740 896 - -
Vivi4g05054 896 SMART WD40_4 605 644 IPR001680 GO:0005515
Vivi4g05054 896 SMART WD40_4 647 686 IPR001680 GO:0005515
Vivi4g05054 896 SMART WD40_4 772 810 IPR001680 GO:0005515
Vivi4g05054 896 SMART WD40_4 690 730 IPR001680 GO:0005515
Vivi4g05054 896 SMART WD40_4 857 896 IPR001680 GO:0005515
Vivi4g05054 896 SMART WD40_4 816 855 IPR001680 GO:0005515
Vivi4g05054 896 SMART Lish 8 40 IPR006594 GO:0005515
Vivi4g05054 896 MobiDBLite consensus disorder prediction 366 539 - -
Vivi4g05054 896 SUPERFAMILY WD40 repeat-like 606 896 IPR036322 GO:0005515
Vivi4g05054 896 ProSitePatterns Trp-Asp (WD) repeats signature. 673 687 IPR019775 -
Vivi4g05054 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 612 653 IPR001680 GO:0005515
Vivi4g05054 896 Gene3D - 746 896 IPR015943 GO:0005515
Vivi4g05054 896 MobiDBLite consensus disorder prediction 140 180 - -
Vivi4g05054 896 Pfam WD domain, G-beta repeat 859 896 IPR001680 GO:0005515
Vivi4g05054 896 Pfam WD domain, G-beta repeat 693 730 IPR001680 GO:0005515
Vivi4g05054 896 Pfam WD domain, G-beta repeat 610 643 IPR001680 GO:0005515
Vivi4g05054 896 Pfam WD domain, G-beta repeat 775 809 IPR001680 GO:0005515
Vivi4g05054 896 Pfam WD domain, G-beta repeat 651 686 IPR001680 GO:0005515
Vivi4g05054 896 Pfam LisH 10 36 IPR006594 GO:0005515
Vivi4g05054 896 CDD WD40 608 896 - -
Vivi4g05054 896 MobiDBLite consensus disorder prediction 89 113 - -
Vivi4g05054 896 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 697 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05054 Vivi-Chr4 181383768 181390942 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05054 691 895 Miscellaneous Gene Families AT5G08390 25.714 1.93e-13 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vivi4g05054 WD40 0.047 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05054 - - gmx:100779972 1249.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05054 4 181383768 181390942 Vivi3g01276 3 21176331 21183889 PCT