Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05053 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTGGATGTTTACATCCATGATTATCTTGTGAAGAGGGATTTGAAAGTTTCTGCTCAGGCTTTTCAAGCCGAAGGGAAGGTGTCATCTGATCCTGTTGCTATTGATGCTCCGGGAGGTTTTTTGTTCGAGTGGTGGTCGGTTTTCTGGGATATATTTATTGCTAGAACGAATGAGAAGCACTCGGAAGTTGCTGCGTCTTATATCGAGACACAATTAATTAAGGCCAGGGAGCAGCAACAGCAACAGCAGCAGCAGCAGCCACAACCTCAGCAGTCGCAACATCAACAACAACAGAATCAACAACAGCAGCAGATGCAGATGCAACAGATGCTGTTACAGAGGCAGCATCAGCAACAACAACAGCAGCAACAGCAACAACAACATCAGCAGCAACAACAGCAACAACCACAGCATCAGCAGCAACAACAGCAGCAGCAACAGCAGGGTAGGGATAGAGCTCATCTCTTGAATGGTGGTGGTGCAAATGGATTAGTTGGAAACCCTAGCACTGCAAATGCAATTGCAACAAAGATGTATGAGGAAAGGTTAAAACTTCCCCTTCAAAGAGATTCTTTGGAAGATGCTGCAATGAAGCAAAGATTTGGAGACCAAATTTTGGACCCAAATCATGCTTCAATTTTGAAGTCATCTGCAGCTACTGGCCAACCGTCAGGTCAAGTTTTACATGGTGCTGCTGGTGCAATGTCTCCACAAATTCAAGGTCGTAATCAGCAACTACCAGGGTCTACTCCGGATATAAAAACTGAGATTAATCCGGTTTTAAACCCTAGAGCTGCGGGTCCTGAATCGTTGATGGCAATTCCTGGATCAAATCAAGGTGGCAACAATTTGACTCTGAAAGGGTGGCCACTCACAGGATTGGAGCAACTTCGTTCTGGTTTACTCCAGCAACAAAAATCTTTCAATCCACAGCCTTTTCATCAACTTCCAATGTTGACACCACAACATCAGCAACAGCTTATGTTAGCACAGCAAAACCTGGCATCACCATCCGCCAGTGATGAAAGTAGAAGGCTCAGAATGCTACTGAGCAGTAGGAATATGGGCGTAGGTAAGGATGGCCTTTCAAATCCTGTCGGTGATGTAGTATCAAATGCTGGATCACCCCTTCAAGCAGGTGGTCCTCCTTTTCCTCGTGCTGATACGGATATGATAATGAAGATGAAACTGGCTCAGTTACAGCACCAACAACAGCAGAATGCCAATCCACAGCAGCAGCAACTTCAACAGCATTCTCTCTCAAATCAGCAATCTCAGTCTTCAAATCATAACATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTCACTGGAGACGGTAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGCTTCCAAAAACCAGACTGGAAGAAAGAGAAAGCAACCTGTTTCTTCTTCTGGTCCTGCCAATAGCTCAGGAACAGCTAACACAGCAGGCCCATCTCCGAGTTCAGCACCCTCAACTCCCTCAGGCTCAACTCATACCCCTGGTGATGTGATATCAATGCCTTCTTTACCTCATAATGGTAGTTCTTCCAAGCCATTAATGATGTTTGGCACTGATGGCACCGGAACTCTTACATCACCTTCAAACCAATTGGCAGATGTGGACCGCTTTGTTGAGGATGCATCTCTTGATGATAACGTTGAGTCTTTTTTATCTCATGATGATAACGACCCTAGAGATCCAGTTGGACGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAGTAAATTCTGTCCGGGCAAGCACAAGCAAAGTTGTTTGTAGTCATTTCTCATCTGATGGCAAATTGCTTGCAAGTGGCGGCCATGACAAAAAGGCTGTTTTATGGTACACAGATTCTCTAAAGCAGAAAGCTACTCTTGAAGAGCATTCATCTTTAATTACTGATGTCCGTTTTAGTCCAACCCTGCCTCGTCTTGCAACATCTTCATATGACAAAACTGTCCGTGTTTGGGATGTTGACAATCCAGGGTATTCGCTTCGTACCTTCACCGGTCATTCTGCATCTGTTATGTCACTAGACTTTCACCCCAATAAAGAGGACCTTATCTGCTCTTGTGACTTCGACGGTGAGATAAGATATTGGAGTATTAACAATGGCAGTTGTGCTAGAGTGTCGAAGGGTGGCACTGCACAGATGAGATTTCAACCTCGGCTAGGGAGATACCTTGCTGCAGCTGCAGAGAATGTCGTCTCTATACTTGATGTCGAGACACAAGCATGCCGATATTCACTAAAGGGCCACACAAAGTCAATACATTCCGTGTGTTGGGATCCATCCGGAGAGTTCTTGGCATCTGTCAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGAACTGGAAGCGAAGGGGAATGTGTTCACGAGCTTAGCTGTAACGGCAATAAATTTCACTCATGCGTTTTCCATCCAACGTACTCGTCGCTGCTGGTCATTGGCTGTTACCAGTCGTTGGAGCTGTGGAACATGACAGAGAACAAGACGATGACTCTGTCTGCTCACGACGGTCTTATTGCTGCACTGGCCGTTTCAACTGTAAACGGTTTGGTTGCTTCAGCTAGTCATGACAAGTTTGTCAAGCTCTGGAAGTGA 2664 0.4546 MSQTNWEADKMLDVYIHDYLVKRDLKVSAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQPQPQQSQHQQQQNQQQQQMQMQQMLLQRQHQQQQQQQQQQQHQQQQQQQPQHQQQQQQQQQQGRDRAHLLNGGGANGLVGNPSTANAIATKMYEERLKLPLQRDSLEDAAMKQRFGDQILDPNHASILKSSAATGQPSGQVLHGAAGAMSPQIQGRNQQLPGSTPDIKTEINPVLNPRAAGPESLMAIPGSNQGGNNLTLKGWPLTGLEQLRSGLLQQQKSFNPQPFHQLPMLTPQHQQQLMLAQQNLASPSASDESRRLRMLLSSRNMGVGKDGLSNPVGDVVSNAGSPLQAGGPPFPRADTDMIMKMKLAQLQHQQQQNANPQQQQLQQHSLSNQQSQSSNHNMHQQDKVGGGGGSVTGDGSMSNSFRGNDQASKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSGSTHTPGDVISMPSLPHNGSSSKPLMMFGTDGTGTLTSPSNQLADVDRFVEDASLDDNVESFLSHDDNDPRDPVGRMDVSKGFTFSEVNSVRASTSKVVCSHFSSDGKLLASGGHDKKAVLWYTDSLKQKATLEEHSSLITDVRFSPTLPRLATSSYDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKEDLICSCDFDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGTGSEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMTENKTMTLSAHDGLIAALAVSTVNGLVASASHDKFVKLWK 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05053 887 CDD WD40 599 887 - -
Vivi4g05053 887 MobiDBLite consensus disorder prediction 409 446 - -
Vivi4g05053 887 Gene3D - 735 887 IPR015943 GO:0005515
Vivi4g05053 887 MobiDBLite consensus disorder prediction 140 163 - -
Vivi4g05053 887 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 645 680 - -
Vivi4g05053 887 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vivi4g05053 887 Coils Coil 118 145 - -
Vivi4g05053 887 MobiDBLite consensus disorder prediction 457 539 - -
Vivi4g05053 887 ProSiteProfiles Trp-Asp (WD) repeats profile. 645 680 IPR001680 GO:0005515
Vivi4g05053 887 ProSiteProfiles Trp-Asp (WD) repeats profile. 688 730 IPR001680 GO:0005515
Vivi4g05053 887 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 887 - -
Vivi4g05053 887 SMART Lish 8 40 IPR006594 GO:0005515
Vivi4g05053 887 MobiDBLite consensus disorder prediction 366 539 - -
Vivi4g05053 887 Pfam WD domain, G-beta repeat 850 887 IPR001680 GO:0005515
Vivi4g05053 887 Pfam WD domain, G-beta repeat 684 721 IPR001680 GO:0005515
Vivi4g05053 887 Pfam WD domain, G-beta repeat 766 800 IPR001680 GO:0005515
Vivi4g05053 887 Pfam WD domain, G-beta repeat 601 634 IPR001680 GO:0005515
Vivi4g05053 887 Pfam WD domain, G-beta repeat 642 677 IPR001680 GO:0005515
Vivi4g05053 887 Gene3D - 586 734 IPR015943 GO:0005515
Vivi4g05053 887 ProSiteProfiles Trp-Asp (WD) repeats profile. 770 810 IPR001680 GO:0005515
Vivi4g05053 887 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 855 887 - -
Vivi4g05053 887 MobiDBLite consensus disorder prediction 140 180 - -
Vivi4g05053 887 FunFam Transcriptional corepressor LEUNIG 731 887 - -
Vivi4g05053 887 Pfam LisH 10 36 IPR006594 GO:0005515
Vivi4g05053 887 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 688 726 - -
Vivi4g05053 887 ProSiteProfiles Trp-Asp (WD) repeats profile. 855 887 IPR001680 GO:0005515
Vivi4g05053 887 ProSiteProfiles Trp-Asp (WD) repeats profile. 603 644 IPR001680 GO:0005515
Vivi4g05053 887 ProSitePatterns Trp-Asp (WD) repeats signature. 664 678 IPR019775 -
Vivi4g05053 887 MobiDBLite consensus disorder prediction 89 113 - -
Vivi4g05053 887 SMART WD40_4 763 801 IPR001680 GO:0005515
Vivi4g05053 887 SMART WD40_4 681 721 IPR001680 GO:0005515
Vivi4g05053 887 SMART WD40_4 638 677 IPR001680 GO:0005515
Vivi4g05053 887 SMART WD40_4 848 887 IPR001680 GO:0005515
Vivi4g05053 887 SMART WD40_4 807 846 IPR001680 GO:0005515
Vivi4g05053 887 SMART WD40_4 596 635 IPR001680 GO:0005515
Vivi4g05053 887 SUPERFAMILY WD40 repeat-like 597 887 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05053 Vivi-Chr4 181383768 181390942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05053 682 886 Miscellaneous Gene Families AT5G08390 25.714 1.67e-13 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vivi4g05053 WD40 0.047 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05053 - - gmx:100779972 1222.22