Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05045 ATGAACAAAGAAAATGTTGAGAATGTTAGGGTGACTCGAGCAAGAGCTAGAGCCATGAAAGCGTCTTCGACTAAGGATGGAGGTGTGGTTGGATTAAGGGATGTGACTAACACTTCAACAAAATCATCGCACAAAAATAAGCGTATTCATACGTCAAATTTTGAGAAGAATGAAGCTTGCAAGAAGAGAAAGACCAAGGTAGCTTCAGAAGAAAATGTCTCCTTACCAGCATTAACAACCAAAGAGAATGTTCAGTCAGAGTTGGCTGAAGATTCTTCCACATTAACAACAACAATGAAAGATTCACTGCAACTGCAAGTTCCACCTCATCTGGTTTTTCCCATGCTTTCAATGCAGGCCTCTGTCAATTCTCCAGTTGAAGATATAAATCTGATATGCGAGAAGCTAAGAACCTCGGTTGGCTTTGGAATCGTGGACATTGATTCGGAGGCAAAGGATTCTCCTGTTTGGACTTCTTATGCTCCTGATATATACTATAATATTCATGTCAAAGAGTGTGAAAAGAGGCCACTAGCCAATTACATGGAGAAGGTGCAGCAAGACATCACTCCAACCATGCGTGGAATTCTGGTTGACTGGCTTGTGGAGGTTTCTGATGAATATAAACTAGTTCCAGACACACTCTACCTTACCGTGAATCTCATTGATCGGTTCCTTTCCTGTCGCGTGATTACAAGACAGAGGCTCCAGTTGCTGGGTGTTACTTGCATGCTGATTTCATCTAAGTATGAAGAGATTTCTGCTCCCCCGCTAGAAGAATTTGTCACCATCACGGACAATACATACTCGAAAAAAGAGATTTTGAAAATGGAGAAAGAGGTACTGAATGTTCTACAGTTCCAGTTATCTGTTCCTACAATCAAAACATTCCTCAGGAGGTTCATCCATGCTGCACAATCTTCTTACAAGGTTGCTTATCCTGAACTGGAATTCATGGCAAACTATTTAGCAGAGCTTGCACTTGTTGAATACAGCTTATTGCAGTATCGACCTTCCAAGATAGCAGCATCTGCAGTTTTTCTCGCCAGATGGACCCTTGGCCAGTCAGAACACCCATGGAATCCGACTCTTGAGCACTATACAAATTACAAAACATCAGAGCTTAAGACTACTGTCCTTATACTGCATGATTTGCAGCGTAATACCAAAGGTTGTGATGGTGTCCGCGAAAAATATCAACAAGATAAGTTCAAAAGTGTGGCGAATTTTTCTCCGAAACCGGTGGAACCGCTTTTCTAG 1260 0.4175 MNKENVENVRVTRARARAMKASSTKDGGVVGLRDVTNTSTKSSHKNKRIHTSNFEKNEACKKRKTKVASEENVSLPALTTKENVQSELAEDSSTLTTTMKDSLQLQVPPHLVFPMLSMQASVNSPVEDINLICEKLRTSVGFGIVDIDSEAKDSPVWTSYAPDIYYNIHVKECEKRPLANYMEKVQQDITPTMRGILVDWLVEVSDEYKLVPDTLYLTVNLIDRFLSCRVITRQRLQLLGVTCMLISSKYEEISAPPLEEFVTITDNTYSKKEILKMEKEVLNVLQFQLSVPTIKTFLRRFIHAAQSSYKVAYPELEFMANYLAELALVEYSLLQYRPSKIAASAVFLARWTLGQSEHPWNPTLEHYTNYKTSELKTTVLILHDLQRNTKGCDGVREKYQQDKFKSVANFSPKPVEPLF 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05045 419 SUPERFAMILY Cyclin-like 291 412 IPR036915 -
Vivi4g05045 419 CDD CYCLIN_AtCycA-like_rpt2 292 404 - -
Vivi4g05045 419 SMART Cyclin_C_2 292 413 IPR004367 -
Vivi4g05045 419 Pfam Cyclin, C-terminal domain 292 412 IPR004367 -
Vivi4g05045 419 SUPERFAMILY Cyclin-like 156 289 IPR036915 -
Vivi4g05045 419 Gene3D - 177 290 - -
Vivi4g05045 419 Gene3D - 163 409 - -
Vivi4g05045 419 SMART cyclin_7 199 283 IPR013763 -
Vivi4g05045 419 SMART cyclin_7 296 384 IPR013763 -
Vivi4g05045 419 Pfam Cyclin, N-terminal domain 163 290 IPR006671 -
Vivi4g05045 419 PIRSF Cyclin_A_B_D_E 1 417 IPR046965 GO:0016538|GO:0044772
Vivi4g05045 419 MobiDBLite consensus disorder prediction 1 50 - -
Vivi4g05045 419 PANTHER CYCLINS 85 399 IPR039361 -
Vivi4g05045 419 FunFam Cyclin A1 279 409 - -
Vivi4g05045 419 FunFam Mitotic cyclin 6 177 277 - -
Vivi4g05045 419 ProSitePatterns Cyclins signature. 194 225 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05045 Vivi-Chr4 181204277 181208696 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05045 8 419 Core Cell Cycle Gene Families AT5G25380 50.820 5.64e-124 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05045 K06627 - gmx:100777132 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05045 4 181204277 181208696 Vivi3g01261 3 21004823 21009373 PCT