Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05044 ATGAACAAAGAAAATGTTGAGAATGTTAGGGTGACTCGAGCAAGAGCTAGAGCCATGAAAGCGTCTTCGACTAAGGATGGAGGTGTGGTTGGATTAAGGGATGTGACTAACACTTCAACAAAATCATCGCACAAAAATAAGCGTATTCATACGTCAAATTTTGAGAATGAAGCTTGCAAGAAGAGAAAGACCAAGGTAGCTTCAGAAGAAAATGTCTCCTTACCAGCATTAACAACCAAAGAGAATGTTCAGTCAGAGTTGGCTGAAGATTCTTCCACATTAACAACAACAATGAAAGATTCACTGCAACTGCAAGTTCCACCTCATCTGGTTTTTCCCATGCTTTCAATGCAGGCCTCTGTCAATTCTCCAGTTGAAGATATAAATCTGATATGCGAGAAGCTAAGAACCTCGGTTGGCTTTGGAATCGTGGACATTGATTCGGAGGCAAAGGATTCTCCTGTTTGGACTTCTTATGCTCCTGATATATACTATAATATTCATGTCAAAGAGTGTGAAAAGAGGCCACTAGCCAATTACATGGAGAAGGTGCAGCAAGACATCACTCCAACCATGCGTGGAATTCTGGTTGACTGGCTTGTGGAGGTTTCTGATGAATATAAACTAGTTCCAGACACACTCTACCTTACCGTGAATCTCATTGATCGGTTCCTTTCCTGTCGCGTGATTACAAGACAGAGGCTCCAGTTGCTGGGTGTTACTTGCATGCTGATTTCATCTAAGTATGAAGAGATTTCTGCTCCCCCGCTAGAAGAATTTGTCACCATCACGGACAATACATACTCGAAAAAAGAGATTTTGAAAATGGAGAAAGAGGTACTGAATGTTCTACAGTTCCAGTTATCTGTTCCTACAATCAAAACATTCCTCAGGAGGTTCATCCATGCTGCACAATCTTCTTACAAGGTTGCTTATCCTGAACTGGAATTCATGGCAAACTATTTAGCAGAGCTTGCACTTGTTGAATACAGCTTATTGCAGTATCGACCTTCCAAGATAGCAGCATCTGCAGTTTTTCTCGCCAGATGGACCCTTGGCCAGTCAGAACACCCATGGAATCCGACTCTTGAGCACTATACAAATTACAAAACATCAGAGCTTAAGACTACTGTCCTTATACTGCATGATTTGCAGCGTAATACCAAAGGTTGTGATGGTGTCCGCGAAAAATATCAACAAGATAAGTTCAAAAGTGTGGCGAATTTTTCTCCGAAACCGGTGGAACCGCTTTTCTAG 1257 0.4177 MNKENVENVRVTRARARAMKASSTKDGGVVGLRDVTNTSTKSSHKNKRIHTSNFENEACKKRKTKVASEENVSLPALTTKENVQSELAEDSSTLTTTMKDSLQLQVPPHLVFPMLSMQASVNSPVEDINLICEKLRTSVGFGIVDIDSEAKDSPVWTSYAPDIYYNIHVKECEKRPLANYMEKVQQDITPTMRGILVDWLVEVSDEYKLVPDTLYLTVNLIDRFLSCRVITRQRLQLLGVTCMLISSKYEEISAPPLEEFVTITDNTYSKKEILKMEKEVLNVLQFQLSVPTIKTFLRRFIHAAQSSYKVAYPELEFMANYLAELALVEYSLLQYRPSKIAASAVFLARWTLGQSEHPWNPTLEHYTNYKTSELKTTVLILHDLQRNTKGCDGVREKYQQDKFKSVANFSPKPVEPLF 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05044 418 Pfam Cyclin, N-terminal domain 162 289 IPR006671 -
Vivi4g05044 418 Gene3D - 162 408 - -
Vivi4g05044 418 MobiDBLite consensus disorder prediction 17 48 - -
Vivi4g05044 418 PIRSF Cyclin_A_B_D_E 1 416 IPR046965 GO:0016538|GO:0044772
Vivi4g05044 418 FunFam Mitotic cyclin 6 176 276 - -
Vivi4g05044 418 SUPERFAMILY Cyclin-like 155 288 IPR036915 -
Vivi4g05044 418 Pfam Cyclin, C-terminal domain 291 411 IPR004367 -
Vivi4g05044 418 SUPERFAMILY Cyclin-like 290 411 IPR036915 -
Vivi4g05044 418 Gene3D - 176 289 - -
Vivi4g05044 418 PANTHER CYCLINS 86 398 IPR039361 -
Vivi4g05044 418 FunFam Cyclin A1 278 408 - -
Vivi4g05044 418 CDD CYCLIN_AtCycA-like_rpt2 291 403 - -
Vivi4g05044 418 ProSitePatterns Cyclins signature. 193 224 IPR006671 -
Vivi4g05044 418 SMART cyclin_7 198 282 IPR013763 -
Vivi4g05044 418 SMART cyclin_7 295 383 IPR013763 -
Vivi4g05044 418 SMART Cyclin_C_2 291 412 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05044 Vivi-Chr4 181204277 181208696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05044 8 418 Core Cell Cycle Gene Families AT5G25380 49.438 1.08e-124 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05044 K06627 - gmx:100777132 474.552